Wall clock time and date at job start Mon Mar 30 2020 02:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48492 * 109.47278 * 270.00179 * 3 2 1 5 5 H 1.48507 * 109.47233 * 30.00646 * 3 2 1 6 6 H 1.48496 * 109.46839 * 150.00178 * 3 2 1 7 7 C 1.37876 * 119.99502 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99457 * 172.99780 * 7 2 1 9 9 C 1.50692 * 120.00535 * 352.99400 * 7 2 1 10 10 C 1.50703 * 115.54852 * 83.14922 * 9 7 2 11 11 C 1.38252 * 119.92154 * 234.32029 * 10 9 7 12 12 C 1.38286 * 120.18177 * 180.02562 * 11 10 9 13 13 C 1.38505 * 120.01443 * 359.97438 * 12 11 10 14 14 O 1.36012 * 120.07624 * 180.02562 * 13 12 11 15 15 C 1.39311 * 119.84405 * 0.02585 * 13 12 11 16 16 N 1.39963 * 120.09374 * 179.97438 * 15 13 12 17 17 C 1.38227 * 119.91650 * 54.34545 * 10 9 7 18 18 C 1.53001 * 117.50214 * 228.82294 * 9 7 2 19 19 C 1.53000 * 117.49967 * 297.48724 * 9 7 2 20 20 H 0.97006 * 120.00065 * 355.01369 * 1 2 3 21 21 H 1.08001 * 119.91272 * 0.02562 * 11 10 9 22 22 H 1.07998 * 119.99058 * 179.97438 * 12 11 10 23 23 H 0.96698 * 114.00158 * 90.00140 * 14 13 12 24 24 H 0.96995 * 120.00541 * 180.02562 * 16 15 13 25 25 H 0.97009 * 119.99790 * 0.02562 * 16 15 13 26 26 H 1.07992 * 120.01151 * 359.72219 * 17 10 9 27 27 H 1.08993 * 117.49693 * 215.00500 * 18 9 7 28 28 H 1.08997 * 117.49748 * 0.02562 * 18 9 7 29 29 H 1.08996 * 117.49751 * 359.96771 * 19 9 7 30 30 H 1.09002 * 117.49985 * 144.99492 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0784 -1.1975 -0.1146 9 6 1.2594 -2.4943 0.1581 10 6 0.6556 -3.0555 -1.1035 11 6 -0.6914 -3.3642 -1.1453 12 6 -1.2510 -3.8799 -2.2999 13 6 -0.4620 -4.0880 -3.4191 14 8 -1.0113 -4.5946 -4.5556 15 6 0.8953 -3.7771 -3.3780 16 7 1.6975 -3.9858 -4.5058 17 6 1.4499 -3.2606 -2.2160 18 6 1.7889 -3.4905 1.1916 19 6 0.4969 -2.7167 1.4657 20 1 -0.4850 0.8369 0.0730 21 1 -1.3083 -3.2023 -0.2737 22 1 -2.3035 -4.1204 -2.3290 23 1 -1.3492 -3.9222 -5.1628 24 1 2.6425 -3.7693 -4.4756 25 1 1.3084 -4.3470 -5.3177 26 1 2.5009 -3.0148 -2.1820 27 1 1.7006 -4.5517 0.9590 28 1 2.6760 -3.2052 1.7571 29 1 0.5346 -1.9227 2.2115 30 1 -0.4415 -3.2689 1.4135 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260298454.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:35 Heat of formation + Delta-G solvation = -17.627059 kcal Electronic energy + Delta-G solvation = -14540.379742 eV Core-core repulsion = 12107.292082 eV Total energy + Delta-G solvation = -2433.087659 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.72493 -38.62908 -36.65148 -34.93548 -33.93005 -30.68963 -28.88723 -27.57756 -23.87127 -23.53177 -22.43329 -20.90873 -19.17634 -18.45414 -17.61748 -16.86563 -16.49861 -16.29394 -15.72544 -15.25788 -14.80690 -14.40537 -13.91942 -13.50177 -13.20447 -12.89910 -12.81771 -12.72099 -12.31223 -11.98595 -11.51061 -11.48788 -11.21108 -10.82500 -10.42307 -10.08973 -9.14635 -8.21743 -8.04149 -6.19063 0.64411 0.87126 1.41641 1.43931 1.52995 2.44491 2.98796 3.09947 3.22788 3.52748 3.62180 4.14268 4.31001 4.59067 4.65458 4.74689 4.80496 4.99403 5.02573 5.18734 5.26712 5.35560 5.57703 5.64462 5.73965 5.81759 6.12031 6.20030 6.46807 6.58304 6.85599 7.05054 7.12597 7.48465 9.00546 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.029226 B = 0.009815 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.819995 B = 2852.059082 C = 3143.635571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.030 3.970 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.053 0.947 9 C 0.043 3.957 10 C 0.024 3.976 11 C -0.171 4.171 12 C -0.104 4.104 13 C -0.007 4.007 14 O -0.496 6.496 15 C 0.189 3.811 16 N -0.865 5.865 17 C -0.190 4.190 18 C -0.181 4.181 19 C -0.161 4.161 20 H 0.258 0.742 21 H 0.108 0.892 22 H 0.136 0.864 23 H 0.390 0.610 24 H 0.403 0.597 25 H 0.406 0.594 26 H 0.114 0.886 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 -5.876 -6.813 9.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.171 4.171 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.543 4.543 8 H 0.072 0.928 9 C 0.043 3.957 10 C 0.023 3.977 11 C -0.191 4.191 12 C -0.123 4.123 13 C -0.056 4.056 14 O -0.306 6.306 15 C 0.083 3.917 16 N -0.407 5.407 17 C -0.213 4.213 18 C -0.218 4.218 19 C -0.198 4.198 20 H 0.067 0.933 21 H 0.126 0.874 22 H 0.154 0.846 23 H 0.246 0.754 24 H 0.232 0.768 25 H 0.235 0.765 26 H 0.132 0.868 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.182 -6.293 -6.601 9.122 hybrid contribution 0.320 1.604 -0.236 1.652 sum 0.502 -4.690 -6.837 8.306 Atomic orbital electron populations 1.70154 1.06875 1.27173 1.48948 1.25616 0.95519 1.01616 0.94370 0.85780 0.79024 0.80127 0.78008 1.20546 1.20953 1.19303 1.20599 0.92595 0.89883 1.51245 0.92837 1.17810 0.98668 0.93691 0.85550 1.19510 0.92929 0.90137 0.95119 1.20724 0.95117 1.04584 0.98659 1.21236 0.99971 0.98419 0.92677 1.17723 0.89789 1.09429 0.88662 1.84822 1.79297 1.36491 1.29943 1.18063 0.90722 0.94411 0.88463 1.42184 1.11139 1.74754 1.12633 1.20286 1.00235 1.08279 0.92513 1.23019 0.97494 0.96239 1.05041 1.22523 0.94017 1.01311 1.01947 0.93276 0.87397 0.84625 0.75444 0.76775 0.76457 0.86813 0.89637 0.89802 0.91943 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.65 13.03 21.45 0.28 -50.37 16 2 C 0.03 1.64 5.40 84.65 0.46 2.10 16 3 Si 0.94 42.97 29.55 68.60 2.03 45.00 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.51 -27.33 8.54 25.60 0.22 -27.11 16 8 H 0.05 2.87 7.82 -2.91 -0.02 2.85 16 9 C 0.04 2.13 1.58 -53.68 -0.08 2.05 16 10 C 0.02 1.13 5.25 -19.86 -0.10 1.03 16 11 C -0.17 -7.46 9.29 22.28 0.21 -7.26 16 12 C -0.10 -3.91 9.98 22.34 0.22 -3.69 16 13 C -0.01 -0.26 6.72 22.59 0.15 -0.11 16 14 O -0.50 -14.00 12.75 -93.68 -1.19 -15.19 16 15 C 0.19 6.81 6.77 38.22 0.26 7.07 16 16 N -0.87 -23.29 9.09 -51.05 -0.46 -23.76 16 17 C -0.19 -8.08 9.29 22.38 0.21 -7.87 16 18 C -0.18 -7.80 9.94 30.62 0.30 -7.49 16 19 C -0.16 -7.52 9.12 30.62 0.28 -7.24 16 20 H 0.26 14.04 8.32 -92.70 -0.77 13.26 16 21 H 0.11 4.80 6.41 -2.91 -0.02 4.78 16 22 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 23 H 0.39 7.58 9.06 -74.06 -0.67 6.91 16 24 H 0.40 9.54 8.85 -92.71 -0.82 8.72 16 25 H 0.41 9.03 8.19 -92.70 -0.76 8.27 16 26 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 27 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 29 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.08 3.42 6.56 -2.39 -0.02 3.40 16 Total: -1.00 -62.38 263.37 1.70 -60.68 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -1.06 Total: 32.16 kcal Atomic # 6 Polarization: -50.64 SS G_CDS: 2.12 Total: -48.52 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -0.18 Total: -74.13 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -1.19 Total: -15.19 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -62.38 1.70 -60.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260298454.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.049 kcal (2) G-P(sol) polarization free energy of solvation -62.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds