Wall clock time and date at job start Mon Mar 30 2020 02:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00117 * 2 1 4 4 H 1.48500 * 109.47396 * 270.00611 * 3 2 1 5 5 H 1.48504 * 109.47007 * 30.00251 * 3 2 1 6 6 H 1.48496 * 109.47192 * 150.00023 * 3 2 1 7 7 C 1.37877 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99780 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00195 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.39171 * 300.00577 * 9 7 2 11 11 C 1.52891 * 109.38623 * 59.80634 * 9 7 2 12 12 N 1.47167 * 108.48749 * 170.47326 * 11 9 7 13 13 C 1.46635 * 110.24211 * 288.67554 * 12 11 9 14 14 C 1.50631 * 110.50027 * 52.49243 * 13 12 11 15 15 C 1.38653 * 118.37488 * 162.67275 * 14 13 12 16 16 C 1.38502 * 120.34160 * 179.84736 * 15 14 13 17 17 O 1.35892 * 120.12872 * 179.97438 * 16 15 14 18 18 C 1.38764 * 119.75103 * 359.97438 * 16 15 14 19 19 C 1.37932 * 119.76424 * 0.06747 * 18 16 15 20 20 C 1.37884 * 121.85184 * 342.61890 * 14 13 12 21 21 H 0.96992 * 119.99865 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.63299 * 290.16928 * 11 9 7 23 23 H 1.08996 * 109.63376 * 50.77690 * 11 9 7 24 24 H 1.00907 * 111.00145 * 165.26562 * 12 11 9 25 25 H 1.08999 * 109.26980 * 172.75616 * 13 12 11 26 26 H 1.08991 * 109.26797 * 292.26716 * 13 12 11 27 27 H 1.07994 * 119.83072 * 359.82672 * 15 14 13 28 28 H 0.96701 * 113.99793 * 90.00388 * 17 16 15 29 29 H 1.07994 * 120.12053 * 180.08864 * 18 16 15 30 30 H 1.08004 * 119.78787 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6251 -2.5557 0.8901 11 6 0.3687 -2.5757 -1.2468 12 7 -0.1779 -3.9383 -1.3486 13 6 0.8795 -4.8823 -1.7241 14 6 2.0581 -4.7511 -0.7953 15 6 2.9842 -5.7822 -0.7561 16 6 4.0849 -5.7026 0.0809 17 8 4.9896 -6.7159 0.1162 18 6 4.2604 -4.5841 0.8832 19 6 3.3368 -3.5604 0.8425 20 6 2.2338 -3.6421 0.0051 21 1 -0.4849 0.8400 0.0004 22 1 -0.4481 -1.8589 -1.1618 23 1 0.9647 -2.3531 -2.1318 24 1 -0.9433 -3.9728 -2.0053 25 1 0.4901 -5.8989 -1.6697 26 1 1.2015 -4.6745 -2.7444 27 1 2.8464 -6.6520 -1.3811 28 1 5.7133 -6.6194 -0.5179 29 1 5.1172 -4.5152 1.5369 30 1 3.4728 -2.6899 1.4671 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260310568.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:39 Heat of formation + Delta-G solvation = -43.243861 kcal Electronic energy + Delta-G solvation = -14625.255511 eV Core-core repulsion = 12191.057024 eV Total energy + Delta-G solvation = -2434.198487 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.01860 -38.77725 -36.32933 -35.31240 -32.76858 -31.42404 -29.29013 -27.05421 -24.99837 -23.70959 -22.80207 -20.59093 -18.74700 -18.46848 -17.50206 -16.83374 -16.24736 -16.08405 -15.63108 -15.11142 -15.00793 -14.41816 -14.01046 -13.91757 -13.35088 -13.13943 -12.83184 -12.68312 -12.47736 -12.25544 -11.93213 -11.43231 -11.27398 -10.88135 -10.54775 -9.76087 -9.22173 -9.12358 -8.12510 -6.26107 0.46410 0.49844 1.41109 1.42512 1.52429 2.41244 2.80602 3.12915 3.33689 3.62768 3.93231 4.13618 4.28670 4.45317 4.53273 4.60542 4.69971 4.76808 4.97090 5.15405 5.25059 5.44533 5.52149 5.58682 5.63476 5.71608 5.98106 6.05775 6.20224 6.39317 6.70225 6.83454 6.95270 7.41806 8.92875 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032280 B = 0.009800 C = 0.007837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.197157 B = 2856.574309 C = 3571.807497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.084 3.916 10 H 0.007 0.993 11 C 0.081 3.919 12 N -0.697 5.697 13 C 0.101 3.899 14 C -0.092 4.092 15 C -0.144 4.144 16 C 0.087 3.913 17 O -0.503 6.503 18 C -0.153 4.153 19 C -0.111 4.111 20 C -0.068 4.068 21 H 0.263 0.737 22 H 0.076 0.924 23 H 0.001 0.999 24 H 0.346 0.654 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.148 0.852 28 H 0.406 0.594 29 H 0.141 0.859 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.076 -9.015 -3.845 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.065 3.935 10 H 0.024 0.976 11 C -0.048 4.048 12 N -0.328 5.328 13 C -0.028 4.028 14 C -0.092 4.092 15 C -0.163 4.163 16 C 0.043 3.957 17 O -0.316 6.316 18 C -0.171 4.171 19 C -0.129 4.129 20 C -0.069 4.069 21 H 0.072 0.928 22 H 0.094 0.906 23 H 0.019 0.981 24 H 0.165 0.835 25 H 0.122 0.878 26 H 0.064 0.936 27 H 0.166 0.834 28 H 0.264 0.736 29 H 0.159 0.841 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.609 -9.249 -2.731 11.156 hybrid contribution 0.604 1.630 -1.108 2.061 sum 6.213 -7.619 -3.839 10.554 Atomic orbital electron populations 1.70011 1.07100 1.27414 1.50861 1.25749 0.95712 1.02332 0.94535 0.85581 0.78765 0.79278 0.78225 1.20167 1.20829 1.19250 1.21466 0.93014 0.90945 1.51201 0.92401 1.17607 0.91391 0.90534 0.93960 0.97554 1.21869 0.98546 0.88077 0.96335 1.60724 1.10684 1.07093 1.54326 1.20793 0.89469 0.97774 0.94769 1.19781 0.97118 0.93796 0.98500 1.21351 0.95260 0.99155 1.00484 1.18235 0.91949 0.88125 0.97433 1.84757 1.39016 1.43680 1.64116 1.21506 1.00812 0.93149 1.01649 1.21150 0.94138 0.98482 0.99116 1.20292 0.96074 0.95385 0.95115 0.92772 0.90577 0.98052 0.83549 0.87800 0.93610 0.83414 0.73582 0.84138 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.02 11.43 21.45 0.25 -51.78 16 2 C 0.02 0.87 5.30 84.65 0.45 1.32 16 3 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 4 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.53 -28.92 7.78 25.60 0.20 -28.72 16 8 H 0.06 3.12 6.77 -2.91 -0.02 3.10 16 9 C 0.08 4.36 2.39 -12.31 -0.03 4.33 16 10 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 11 C 0.08 3.90 5.48 86.22 0.47 4.38 16 12 N -0.70 -27.41 6.88 -518.26 -3.56 -30.97 16 13 C 0.10 3.40 6.33 85.59 0.54 3.95 16 14 C -0.09 -3.50 5.79 -19.87 -0.12 -3.62 16 15 C -0.14 -4.59 9.59 22.43 0.22 -4.38 16 16 C 0.09 2.72 6.70 22.46 0.15 2.87 16 17 O -0.50 -12.60 13.51 -92.34 -1.25 -13.85 16 18 C -0.15 -5.22 9.99 22.32 0.22 -5.00 16 19 C -0.11 -4.60 8.73 22.31 0.19 -4.41 16 20 C -0.07 -3.09 5.44 -19.82 -0.11 -3.19 16 21 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 22 H 0.08 4.05 6.39 -2.39 -0.02 4.04 16 23 H 0.00 0.06 8.02 -2.39 -0.02 0.04 16 24 H 0.35 11.46 8.90 -89.69 -0.80 10.67 16 25 H 0.10 2.87 8.13 -2.39 -0.02 2.85 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 28 H 0.41 5.87 9.06 -74.06 -0.67 5.20 16 29 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.12 5.04 7.15 -2.91 -0.02 5.02 16 Total: -1.00 -63.73 251.32 -0.65 -64.37 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.30 Total: 19.64 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 2.19 Total: -32.47 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -3.32 Total: -82.75 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.25 Total: -13.85 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -63.73 -0.65 -64.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310568.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.130 kcal (2) G-P(sol) polarization free energy of solvation -63.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds