Wall clock time and date at job start Mon Mar 30 2020 02:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86801 * 119.99870 * 2 1 4 4 H 1.48502 * 109.47014 * 239.99806 * 3 2 1 5 5 H 1.48505 * 109.47051 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46931 * 120.00011 * 3 2 1 7 7 C 1.38653 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99794 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.35757 * 116.99784 * 185.06117 * 9 7 2 11 11 C 1.38826 * 119.91866 * 354.38155 * 10 9 7 12 12 C 1.38123 * 120.08345 * 179.89126 * 11 10 9 13 13 C 1.38129 * 119.98414 * 0.36060 * 12 11 10 14 14 C 1.39119 * 120.17819 * 359.51149 * 13 12 11 15 15 C 1.38509 * 120.06639 * 0.33989 * 14 13 12 16 16 C 1.50582 * 121.53677 * 180.09366 * 15 14 13 17 17 C 1.52854 * 110.49465 * 339.38147 * 16 15 14 18 18 C 1.53433 * 108.83674 * 51.28833 * 17 16 15 19 19 N 1.39928 * 119.10449 * 179.97438 * 14 13 12 20 20 H 0.96999 * 120.00334 * 359.97438 * 1 2 3 21 21 H 1.07998 * 119.95669 * 359.90978 * 11 10 9 22 22 H 1.08000 * 120.00993 * 180.08671 * 12 11 10 23 23 H 1.08005 * 119.91066 * 179.74535 * 13 12 11 24 24 H 1.09007 * 109.30191 * 99.70058 * 16 15 14 25 25 H 1.09005 * 109.29635 * 219.27361 * 16 15 14 26 26 H 1.09000 * 109.57732 * 171.09215 * 17 16 15 27 27 H 1.08993 * 109.57642 * 291.35078 * 17 16 15 28 28 H 1.08994 * 109.79815 * 56.40635 * 18 17 16 29 29 H 1.09007 * 109.79043 * 177.26130 * 18 17 16 30 30 H 0.97007 * 120.53664 * 346.86250 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4565 -3.4361 0.0902 12 6 4.2080 -4.5897 0.2002 13 6 3.5798 -5.8142 0.3184 14 6 2.1907 -5.8886 0.3371 15 6 1.4325 -4.7344 0.2302 16 6 -0.0727 -4.7763 0.2488 17 6 -0.5737 -6.1739 -0.1147 18 6 0.1435 -7.2027 0.7692 19 7 1.5777 -7.1407 0.4571 20 1 -0.4850 0.8400 0.0004 21 1 3.9481 -2.4794 -0.0078 22 1 5.2866 -4.5349 0.1894 23 1 4.1686 -6.7159 0.4002 24 1 -0.4281 -4.5140 1.2453 25 1 -0.4620 -4.0582 -0.4730 26 1 -1.6487 -6.2323 0.0556 27 1 -0.3585 -6.3776 -1.1636 28 1 -0.0164 -6.9618 1.8201 29 1 -0.2377 -8.2016 0.5566 30 1 2.0916 -7.9546 0.3366 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260318132.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:31 Heat of formation + Delta-G solvation = -6.889030 kcal Electronic energy + Delta-G solvation = -14544.176081 eV Core-core repulsion = 12111.554057 eV Total energy + Delta-G solvation = -2432.622023 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45315 -37.38085 -35.06542 -32.57934 -31.75749 -29.72580 -27.82734 -25.30132 -24.13112 -22.47290 -21.23187 -19.24686 -17.87454 -16.99003 -15.73843 -15.12596 -14.78878 -14.16267 -13.91119 -13.70962 -13.34507 -13.16913 -12.59622 -12.28022 -12.02766 -11.70496 -11.46897 -11.00548 -10.94496 -10.52654 -10.46822 -10.25040 -10.14290 -9.25144 -9.13627 -8.69157 -7.17831 -6.68006 -6.37071 -3.95579 2.40468 2.59467 3.17894 3.19673 3.21503 3.89935 4.07062 4.69610 5.16147 5.21077 5.38796 5.40685 5.54072 5.77723 5.86551 5.92427 6.08179 6.20766 6.39215 6.40670 6.59757 6.65415 6.75128 7.00044 7.15423 7.22316 7.47826 7.54485 7.65358 8.07134 8.09625 8.32638 9.09433 9.81483 10.81178 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.040299 B = 0.008559 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.645685 B = 3270.778722 C = 3919.314767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.175 6.175 10 C 0.187 3.813 11 C -0.275 4.275 12 C -0.042 4.042 13 C -0.274 4.274 14 C 0.246 3.754 15 C -0.221 4.221 16 C -0.052 4.052 17 C -0.135 4.135 18 C 0.128 3.872 19 N -0.758 5.758 20 H 0.269 0.731 21 H 0.124 0.876 22 H 0.106 0.894 23 H 0.102 0.898 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.020 -10.034 0.678 10.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.132 3.868 11 C -0.296 4.296 12 C -0.061 4.061 13 C -0.297 4.297 14 C 0.145 3.855 15 C -0.227 4.227 16 C -0.090 4.090 17 C -0.174 4.174 18 C 0.003 3.997 19 N -0.391 5.391 20 H 0.079 0.921 21 H 0.141 0.859 22 H 0.124 0.876 23 H 0.120 0.880 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.382 -9.769 0.698 9.891 hybrid contribution 0.833 0.534 -0.040 0.990 sum 2.215 -9.235 0.659 9.520 Atomic orbital electron populations 1.70029 1.05870 1.27549 1.46647 1.25247 0.95813 0.98681 0.96752 0.85812 0.78688 0.79976 0.79123 1.19589 1.20380 1.19591 1.21295 0.91830 0.80877 1.52629 0.89141 1.83941 1.34229 1.11274 1.78347 1.18975 0.89882 0.87219 0.90687 1.20939 0.93600 0.98874 1.16160 1.20446 0.98022 0.91915 0.95727 1.20116 0.92024 0.97418 1.20127 1.17070 0.90760 0.84513 0.93120 1.18248 0.94809 0.89981 1.19689 1.19904 0.91762 0.95574 1.01712 1.21880 0.99225 0.96311 0.99939 1.21422 0.81324 0.98651 0.98340 1.44496 1.08730 1.04656 1.81242 0.92148 0.85867 0.87618 0.87977 0.92290 0.90651 0.91399 0.91786 0.92947 0.91349 0.77174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.56 13.67 55.48 0.76 -24.80 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -11.10 9.48 30.89 0.29 -10.81 16 8 H 0.09 2.40 5.19 -52.49 -0.27 2.13 16 9 O -0.17 -5.05 8.86 0.04 0.00 -5.05 16 10 C 0.19 4.71 6.61 -39.05 -0.26 4.45 16 11 C -0.28 -6.32 9.16 -39.41 -0.36 -6.68 16 12 C -0.04 -0.83 10.04 -39.66 -0.40 -1.23 16 13 C -0.27 -5.12 9.87 -39.29 -0.39 -5.51 16 14 C 0.25 4.78 6.47 -83.73 -0.54 4.24 16 15 C -0.22 -4.94 5.77 -104.27 -0.60 -5.54 16 16 C -0.05 -1.06 5.43 -28.02 -0.15 -1.21 16 17 C -0.14 -2.09 6.11 -26.58 -0.16 -2.25 16 18 C 0.13 1.74 7.11 -3.59 -0.03 1.72 16 19 N -0.76 -11.63 5.80 -58.10 -0.34 -11.97 16 20 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 21 H 0.12 2.82 5.62 -52.49 -0.29 2.53 16 22 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 23 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.07 1.69 7.75 -51.93 -0.40 1.29 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.39 4.96 8.86 -40.82 -0.36 4.59 16 LS Contribution 253.31 15.07 3.82 3.82 Total: -1.00 -31.15 253.31 -6.90 -38.05 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.43 Total: 5.92 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -2.69 Total: -21.83 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.42 Total: -36.77 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: 0.00 Total: -5.05 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.15 -6.90 -38.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260318132.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.165 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds