Wall clock time and date at job start Mon Mar 30 2020 02:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00144 * 2 1 4 4 H 1.48497 * 109.47130 * 274.54645 * 3 2 1 5 5 H 1.48502 * 109.46897 * 34.54516 * 3 2 1 6 6 H 1.48502 * 109.46854 * 154.54273 * 3 2 1 7 7 C 1.37877 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00113 * 346.35683 * 7 2 1 9 9 C 1.50701 * 120.00133 * 166.62726 * 7 2 1 10 10 C 1.50711 * 112.74296 * 84.17284 * 9 7 2 11 11 C 1.38259 * 119.94214 * 216.88098 * 10 9 7 12 12 C 1.38142 * 120.05417 * 179.72428 * 11 10 9 13 13 C 1.38729 * 119.94278 * 0.54820 * 12 11 10 14 14 O 1.35906 * 120.05645 * 179.74371 * 13 12 11 15 15 C 1.38727 * 119.88874 * 359.72760 * 13 12 11 16 16 C 1.38143 * 119.94620 * 359.97438 * 15 13 12 17 17 C 1.53512 * 113.47775 * 313.40379 * 9 7 2 18 18 C 1.53701 * 83.50780 * 271.22351 * 17 9 7 19 19 N 1.47476 * 87.92907 * 333.97365 * 18 17 9 20 20 H 0.97003 * 119.99749 * 359.97438 * 1 2 3 21 21 H 1.08004 * 119.97216 * 0.02562 * 11 10 9 22 22 H 1.08000 * 120.02819 * 180.27248 * 12 11 10 23 23 H 0.96693 * 114.00192 * 269.97865 * 14 13 12 24 24 H 1.08005 * 120.02671 * 180.02562 * 15 13 12 25 25 H 1.08003 * 119.97557 * 180.02562 * 16 15 13 26 26 H 1.08993 * 114.16893 * 24.90085 * 17 9 7 27 27 H 1.09004 * 114.17122 * 157.60730 * 17 9 7 28 28 H 1.09007 * 113.48088 * 219.21170 * 18 17 9 29 29 H 1.08999 * 113.53042 * 88.74977 * 18 17 9 30 30 H 1.00900 * 110.99646 * 138.69939 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4006 2.1019 -1.3956 5 1 1.4979 2.6230 0.7939 6 1 3.5915 1.4143 0.6018 7 6 2.0045 -1.1940 -0.0005 8 1 1.4874 -2.1163 0.2197 9 6 3.4809 -1.2116 -0.3024 10 6 4.3270 -0.9189 0.9100 11 6 5.4838 -0.1730 0.7804 12 6 6.2581 0.1015 1.8910 13 6 5.8800 -0.3817 3.1353 14 8 6.6428 -0.1174 4.2286 15 6 4.7218 -1.1348 3.2617 16 6 3.9477 -1.4013 2.1490 17 6 3.8638 -0.3756 -1.5316 18 6 3.5920 -1.6848 -2.2896 19 7 3.9144 -2.4091 -1.0461 20 1 -0.4850 0.8401 0.0004 21 1 5.7798 0.1996 -0.1892 22 1 7.1594 0.6880 1.7900 23 1 7.3273 -0.7786 4.3998 24 1 4.4252 -1.5117 4.2294 25 1 3.0457 -1.9872 2.2469 26 1 3.1635 0.4275 -1.7609 27 1 4.9065 -0.0583 -1.5485 28 1 4.2988 -1.8735 -3.0977 29 1 2.5541 -1.7992 -2.6023 30 1 3.2762 -3.1767 -0.8991 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260423053.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:55 Heat of formation + Delta-G solvation = 0.903711 kcal Electronic energy + Delta-G solvation = -14899.373193 eV Core-core repulsion = 12467.089088 eV Total energy + Delta-G solvation = -2432.284105 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.35622 -39.81379 -37.22462 -34.55384 -31.87810 -31.27152 -28.49694 -28.13570 -24.97843 -23.46179 -22.56583 -20.51418 -19.28477 -18.62199 -17.58909 -17.23187 -16.26452 -16.08663 -15.81529 -15.18859 -15.03755 -14.37570 -14.25301 -13.52072 -13.43455 -13.07161 -12.91462 -12.72738 -12.21416 -12.08325 -11.89580 -11.41277 -11.27014 -10.98658 -10.72835 -9.78736 -9.74362 -9.15640 -8.40262 -6.44987 0.45790 0.54936 1.26205 1.39144 1.51621 2.29380 2.83083 2.96030 3.40112 3.65792 3.84645 4.07785 4.17103 4.26315 4.42196 4.62255 4.72275 4.82705 4.92425 4.97500 5.00445 5.14997 5.23140 5.37242 5.48692 5.55702 5.69462 5.92471 6.06984 6.15295 6.45768 6.70957 6.95299 7.24727 8.74017 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.028783 B = 0.012402 C = 0.010875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.579435 B = 2257.239321 C = 2574.141225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.040 3.960 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.308 1.308 6 H -0.222 1.222 7 C -0.522 4.522 8 H 0.043 0.957 9 C 0.196 3.804 10 C -0.058 4.058 11 C -0.112 4.112 12 C -0.152 4.152 13 C 0.085 3.915 14 O -0.506 6.506 15 C -0.157 4.157 16 C -0.099 4.099 17 C -0.168 4.168 18 C 0.026 3.974 19 N -0.623 5.623 20 H 0.267 0.733 21 H 0.135 0.865 22 H 0.147 0.853 23 H 0.406 0.594 24 H 0.136 0.864 25 H 0.110 0.890 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.998 -0.265 1.648 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.161 4.161 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.236 1.236 6 H -0.144 1.144 7 C -0.560 4.560 8 H 0.061 0.939 9 C 0.105 3.895 10 C -0.059 4.059 11 C -0.130 4.130 12 C -0.170 4.170 13 C 0.041 3.959 14 O -0.319 6.319 15 C -0.175 4.175 16 C -0.118 4.118 17 C -0.205 4.205 18 C -0.105 4.105 19 N -0.246 5.246 20 H 0.076 0.924 21 H 0.152 0.848 22 H 0.165 0.835 23 H 0.265 0.735 24 H 0.154 0.846 25 H 0.128 0.872 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.376 0.214 1.749 13.492 hybrid contribution -1.365 0.306 0.056 1.400 sum 12.011 0.520 1.805 12.157 Atomic orbital electron populations 1.70052 1.08195 1.28200 1.50482 1.25566 0.94951 1.02355 0.93192 0.86383 0.81744 0.79375 0.78391 1.19096 1.23640 1.14428 1.20990 0.91521 0.94065 1.49456 0.93888 1.19215 0.91171 0.90125 0.89024 1.20234 0.94134 0.96019 0.95482 1.21201 0.94039 0.98590 0.99212 1.21530 1.01632 1.02318 0.91502 1.18414 0.92727 0.98284 0.86490 1.84760 1.50055 1.52822 1.44231 1.21529 0.96370 1.00459 0.99165 1.20973 0.98803 0.99615 0.92397 1.23685 1.01332 0.97060 0.98401 1.23137 0.99746 0.93362 0.94220 1.67435 1.47684 1.04879 1.04592 0.92421 0.84767 0.83532 0.73547 0.84608 0.87231 0.92710 0.87947 0.88578 0.93084 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.96 21.45 0.30 -55.74 16 2 C 0.04 2.23 5.34 84.66 0.45 2.68 16 3 Si 0.91 43.16 24.22 68.60 1.66 44.82 16 4 H -0.27 -11.83 6.64 99.48 0.66 -11.17 16 5 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 6 H -0.22 -9.77 4.74 99.48 0.47 -9.30 16 7 C -0.52 -27.80 7.29 25.60 0.19 -27.62 16 8 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 9 C 0.20 8.62 0.84 -0.70 0.00 8.62 16 10 C -0.06 -2.38 3.83 -19.85 -0.08 -2.46 16 11 C -0.11 -4.01 8.01 22.25 0.18 -3.83 16 12 C -0.15 -4.76 9.99 22.36 0.22 -4.54 16 13 C 0.09 2.70 6.70 22.50 0.15 2.86 16 14 O -0.51 -13.08 13.50 -92.50 -1.25 -14.33 16 15 C -0.16 -5.45 9.99 22.36 0.22 -5.22 16 16 C -0.10 -4.05 9.24 22.25 0.21 -3.85 16 17 C -0.17 -6.63 5.80 31.00 0.18 -6.45 16 18 C 0.03 0.95 8.29 83.63 0.69 1.65 16 19 N -0.62 -24.83 8.44 -504.20 -4.26 -29.08 16 20 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 21 H 0.13 4.33 5.68 -2.91 -0.02 4.32 16 22 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 23 H 0.41 6.00 9.06 -74.06 -0.67 5.33 16 24 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 25 H 0.11 4.81 7.42 -2.91 -0.02 4.78 16 26 H 0.05 2.34 4.25 -2.39 -0.01 2.33 16 27 H 0.10 3.50 5.74 -2.39 -0.01 3.48 16 28 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 29 H 0.05 2.06 7.99 -2.39 -0.02 2.04 16 30 H 0.31 12.65 8.55 -89.69 -0.77 11.89 16 Total: -1.00 -63.90 243.24 -1.67 -65.57 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.54 Total: 26.93 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 2.42 Total: -38.17 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -3.96 Total: -84.82 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -1.25 Total: -14.33 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.66 Total: 44.82 kcal Total: -63.90 -1.67 -65.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423053.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.472 kcal (2) G-P(sol) polarization free energy of solvation -63.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds