Wall clock time and date at job start Mon Mar 30 2020 02:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86797 * 120.00304 * 2 1 4 4 H 1.48497 * 109.47381 * 240.00089 * 3 2 1 5 5 H 1.48502 * 109.46747 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47083 * 119.99690 * 3 2 1 7 7 C 1.38659 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99884 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00132 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00384 * 185.05651 * 9 7 2 11 11 C 1.38910 * 120.13516 * 354.45580 * 10 9 7 12 12 C 1.37887 * 119.75486 * 180.10386 * 11 10 9 13 13 C 1.38765 * 120.44740 * 0.03689 * 12 11 10 14 14 C 1.37930 * 119.95677 * 359.78362 * 13 12 11 15 15 C 1.38600 * 119.78822 * 0.27063 * 14 13 12 16 16 C 1.50635 * 121.84165 * 180.29448 * 14 13 12 17 17 N 1.46626 * 110.49840 * 342.43497 * 16 14 13 18 18 C 1.47159 * 110.25038 * 52.54387 * 17 16 14 19 19 C 1.50742 * 118.41611 * 179.57421 * 13 12 11 20 20 H 0.96999 * 120.00073 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.12372 * 0.07650 * 11 10 9 22 22 H 1.07995 * 119.77646 * 180.02562 * 12 11 10 23 23 H 1.08004 * 119.83477 * 179.87249 * 15 14 13 24 24 H 1.08999 * 109.26468 * 222.17274 * 16 14 13 25 25 H 1.08992 * 109.26963 * 102.69656 * 16 14 13 26 26 H 1.00901 * 110.99907 * 175.96704 * 17 16 14 27 27 H 1.08992 * 109.63167 * 48.41918 * 18 17 16 28 28 H 1.09002 * 109.62647 * 169.00621 * 18 17 16 29 29 H 1.09003 * 109.38738 * 283.38648 * 19 13 12 30 30 H 1.09000 * 109.39126 * 43.18970 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3346 -2.3684 0.0005 10 6 2.0697 -3.5046 0.1077 11 6 3.4573 -3.4412 0.0952 12 6 4.1963 -4.6004 0.2024 13 6 3.5632 -5.8294 0.3218 14 6 2.1856 -5.8958 0.3383 15 6 1.4389 -4.7333 0.2296 16 6 1.4547 -7.2061 0.4726 17 7 2.3474 -8.3265 0.1601 18 6 3.5803 -8.2333 0.9581 19 6 4.4156 -7.0683 0.4262 20 1 -0.4850 0.8400 0.0004 21 1 3.9556 -2.4876 0.0015 22 1 5.2751 -4.5515 0.1931 23 1 0.3601 -4.7846 0.2404 24 1 0.6085 -7.2179 -0.2143 25 1 1.0896 -7.3112 1.4942 26 1 1.8849 -9.2104 0.3110 27 1 3.3274 -8.0558 2.0033 28 1 4.1460 -9.1607 0.8676 29 1 4.8059 -7.3231 -0.5592 30 1 5.2460 -6.8800 1.1067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260472072.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:00 Heat of formation + Delta-G solvation = -6.045082 kcal Electronic energy + Delta-G solvation = -14234.083927 eV Core-core repulsion = 11801.498500 eV Total energy + Delta-G solvation = -2432.585427 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.48163 -37.71401 -35.16137 -32.37660 -31.85191 -29.84711 -28.15677 -25.25092 -23.99932 -22.40340 -21.50844 -19.42994 -17.50088 -16.79771 -16.20987 -15.04236 -14.69036 -14.37195 -14.07696 -13.96515 -13.44641 -13.04515 -12.73554 -12.35431 -12.13054 -11.92078 -11.68779 -11.32301 -11.08849 -10.55462 -10.45357 -10.34444 -10.21758 -9.31726 -8.77562 -8.52114 -7.92726 -7.08947 -6.41962 -4.00993 2.16732 2.36645 3.14630 3.15653 3.18467 3.98442 4.32037 4.53038 5.03353 5.09604 5.17137 5.32493 5.53397 5.64128 5.65674 5.67667 5.88691 5.90626 6.01466 6.19298 6.27002 6.43118 6.71787 6.87116 7.01347 7.10804 7.29021 7.34190 7.46109 7.54045 7.85386 8.02881 9.03610 9.74481 10.76254 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.062939 B = 0.006574 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.768548 B = 4258.480920 C = 4658.260669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.228 4.228 12 C -0.075 4.075 13 C -0.165 4.165 14 C -0.039 4.039 15 C -0.192 4.192 16 C 0.101 3.899 17 N -0.684 5.684 18 C 0.056 3.944 19 C -0.059 4.059 20 H 0.270 0.730 21 H 0.127 0.873 22 H 0.107 0.893 23 H 0.116 0.884 24 H 0.084 0.916 25 H 0.039 0.961 26 H 0.339 0.661 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.995 -11.300 1.904 12.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.083 6.083 10 C 0.100 3.900 11 C -0.247 4.247 12 C -0.093 4.093 13 C -0.167 4.167 14 C -0.039 4.039 15 C -0.212 4.212 16 C -0.028 4.028 17 N -0.314 5.314 18 C -0.073 4.073 19 C -0.096 4.096 20 H 0.080 0.920 21 H 0.145 0.855 22 H 0.125 0.875 23 H 0.134 0.866 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.156 0.844 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.826 -10.773 1.321 12.318 hybrid contribution 0.177 0.696 0.859 1.119 sum 6.004 -10.077 2.180 11.931 Atomic orbital electron populations 1.70028 1.05942 1.27700 1.46303 1.25272 0.95835 0.98773 0.96623 0.85788 0.78688 0.79835 0.79148 1.19521 1.20286 1.19554 1.21264 0.91737 0.80879 1.52984 0.89211 1.83973 1.34215 1.11350 1.78773 1.19219 0.90230 0.87987 0.92515 1.21148 0.93909 0.98841 1.10824 1.20681 0.98334 0.91790 0.98494 1.18972 0.92747 0.94034 1.10900 1.18979 0.92748 0.92923 0.99267 1.19989 0.99293 0.89891 1.12057 1.20719 0.94580 0.88447 0.99035 1.60580 1.07066 1.04927 1.58863 1.21968 0.91856 0.98760 0.94755 1.20274 0.96439 0.92117 1.00815 0.92023 0.85541 0.87519 0.86595 0.89781 0.94311 0.84385 0.94905 0.91065 0.91378 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.75 29.55 -169.99 -5.02 15.72 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.39 -11.16 9.49 30.89 0.29 -10.86 16 8 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 9 O -0.18 -5.23 9.76 0.07 0.00 -5.23 16 10 C 0.15 3.84 6.64 -39.18 -0.26 3.58 16 11 C -0.23 -5.13 9.17 -39.46 -0.36 -5.49 16 12 C -0.07 -1.44 9.65 -39.51 -0.38 -1.82 16 13 C -0.17 -3.04 5.78 -104.52 -0.60 -3.64 16 14 C -0.04 -0.74 5.79 -104.63 -0.61 -1.34 16 15 C -0.19 -4.24 9.59 -39.29 -0.38 -4.62 16 16 C 0.10 1.53 6.33 -5.16 -0.03 1.49 16 17 N -0.68 -9.03 6.88 -115.17 -0.79 -9.82 16 18 C 0.06 0.70 6.58 -3.73 -0.02 0.67 16 19 C -0.06 -0.85 5.94 -27.91 -0.17 -1.01 16 20 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 21 H 0.13 2.82 5.66 -52.49 -0.30 2.52 16 22 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 23 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 24 H 0.08 1.21 8.13 -51.93 -0.42 0.78 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.34 3.46 8.90 -39.29 -0.35 3.11 16 27 H 0.03 0.41 8.05 -51.93 -0.42 0.00 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 254.57 15.07 3.84 3.84 Total: -1.00 -31.30 254.57 -7.27 -38.57 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.43 Total: 3.88 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.62 Total: -22.06 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.03 Total: -34.72 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: 0.00 Total: -5.23 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.30 -7.27 -38.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472072.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.525 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds