Wall clock time and date at job start Mon Mar 30 2020 02:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86794 * 120.00275 * 2 1 4 4 H 1.48497 * 109.47417 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47130 * 299.99934 * 3 2 1 6 6 H 1.48499 * 109.47233 * 60.00177 * 3 2 1 7 7 C 1.38619 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99793 * 179.97438 * 7 2 1 9 9 O 1.34810 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.35802 * 117.00036 * 185.05027 * 9 7 2 11 11 C 1.38923 * 119.99116 * 354.45506 * 10 9 7 12 12 C 1.37916 * 119.83766 * 179.78374 * 11 10 9 13 13 C 1.39126 * 120.12907 * 359.94752 * 12 11 10 14 14 C 1.38671 * 120.13633 * 359.95375 * 13 12 11 15 15 C 1.38422 * 119.62276 * 0.13738 * 14 13 12 16 16 C 1.50606 * 121.49763 * 180.25369 * 14 13 12 17 17 C 1.52847 * 110.49591 * 339.34774 * 16 14 13 18 18 C 1.53424 * 108.84265 * 51.39574 * 17 16 14 19 19 N 1.40055 * 119.06425 * 179.79473 * 13 12 11 20 20 H 0.96997 * 119.99268 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.07898 * 359.80285 * 11 10 9 22 22 H 1.08003 * 119.93902 * 179.91875 * 12 11 10 23 23 H 1.07994 * 119.86560 * 179.89816 * 15 14 13 24 24 H 1.09003 * 109.26500 * 219.08945 * 16 14 13 25 25 H 1.08990 * 109.24529 * 99.59855 * 16 14 13 26 26 H 1.09008 * 109.57731 * 291.59027 * 17 16 14 27 27 H 1.08998 * 109.68346 * 171.26557 * 17 16 14 28 28 H 1.08998 * 109.80430 * 177.17595 * 18 17 16 29 29 H 1.09003 * 109.79607 * 56.31502 * 18 17 16 30 30 H 0.96998 * 120.54504 * 346.73149 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.7099 1.3463 -0.0006 5 1 1.8912 2.3964 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3680 0.0005 10 6 2.0702 -3.5046 0.1076 11 6 3.4578 -3.4377 0.0946 12 6 4.2016 -4.5935 0.2081 13 6 3.5649 -5.8239 0.3363 14 6 2.1800 -5.8930 0.3515 15 6 1.4358 -4.7316 0.2356 16 6 1.4593 -7.2076 0.4945 17 6 2.3766 -8.3661 0.1038 18 6 3.6975 -8.2333 0.8728 19 7 4.3420 -6.9840 0.4456 20 1 -0.4849 0.8401 -0.0004 21 1 3.9528 -2.4828 -0.0037 22 1 5.2804 -4.5435 0.1969 23 1 0.3570 -4.7810 0.2454 24 1 0.5822 -7.2091 -0.1527 25 1 1.1425 -7.3329 1.5298 26 1 2.5728 -8.3312 -0.9679 27 1 1.9001 -9.3132 0.3572 28 1 4.3449 -9.0797 0.6437 29 1 3.4992 -8.1987 1.9441 30 1 5.2903 -6.9630 0.2428 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260514187.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:34 Heat of formation + Delta-G solvation = -5.418562 kcal Electronic energy + Delta-G solvation = -14249.944016 eV Core-core repulsion = 11817.385757 eV Total energy + Delta-G solvation = -2432.558259 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.43906 -37.60460 -34.75057 -32.80036 -32.03434 -29.42510 -28.29111 -25.12709 -24.21145 -22.31100 -21.72884 -19.41802 -17.48878 -16.86284 -16.49538 -15.27270 -14.56501 -14.29643 -13.89124 -13.59069 -13.39270 -13.04151 -12.76497 -12.69130 -12.08925 -11.78523 -11.56208 -11.16100 -11.02825 -10.60975 -10.54111 -10.41199 -10.25583 -9.24793 -9.07923 -8.39134 -7.95404 -6.36335 -6.30128 -3.87637 2.19237 2.59043 3.19442 3.20817 3.26100 3.96979 4.07917 4.63006 4.97635 5.11041 5.18739 5.25685 5.50820 5.59340 5.67743 5.82625 5.90809 5.95103 6.11590 6.24227 6.29103 6.38185 6.64020 6.91219 6.92690 7.21796 7.35372 7.48397 7.67495 8.02824 8.14484 8.31915 9.15784 9.90610 10.88612 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.063141 B = 0.006602 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.347707 B = 4240.130237 C = 4639.414394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.035 3.965 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.386 4.386 8 H 0.088 0.912 9 O -0.189 6.189 10 C 0.118 3.882 11 C -0.193 4.193 12 C -0.139 4.139 13 C 0.126 3.874 14 C -0.107 4.107 15 C -0.155 4.155 16 C -0.068 4.068 17 C -0.135 4.135 18 C 0.132 3.868 19 N -0.765 5.765 20 H 0.266 0.734 21 H 0.127 0.873 22 H 0.106 0.894 23 H 0.116 0.884 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.600 -12.494 0.921 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.167 4.167 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.463 4.463 8 H 0.106 0.894 9 O -0.094 6.094 10 C 0.066 3.934 11 C -0.213 4.213 12 C -0.161 4.161 13 C 0.028 3.972 14 C -0.111 4.111 15 C -0.175 4.175 16 C -0.105 4.105 17 C -0.174 4.174 18 C 0.006 3.994 19 N -0.402 5.402 20 H 0.076 0.924 21 H 0.145 0.855 22 H 0.124 0.876 23 H 0.134 0.866 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.036 -12.398 0.957 13.822 hybrid contribution 0.919 0.921 -0.077 1.303 sum 6.955 -11.477 0.880 13.449 Atomic orbital electron populations 1.70065 1.05832 1.27116 1.47612 1.25217 0.95805 0.98605 0.97115 0.85692 0.79067 0.80804 0.78097 1.19282 1.20328 1.20314 1.21286 0.91614 0.81113 1.52272 0.89413 1.83985 1.33821 1.11106 1.80489 1.19156 0.90102 0.88181 0.95963 1.21005 0.93786 0.98291 1.08203 1.20334 0.98212 0.90974 1.06580 1.17165 0.89866 0.86039 1.04120 1.18845 0.91298 0.94165 1.06807 1.19935 0.99113 0.89611 1.08835 1.20228 0.97547 0.91440 1.01293 1.21859 0.96497 0.98142 1.00894 1.21305 0.93996 0.86575 0.97519 1.44277 1.09675 1.06603 1.79609 0.92381 0.85487 0.87573 0.86566 0.91139 0.91569 0.91541 0.91368 0.91434 0.93389 0.77462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.67 55.48 0.76 -25.54 16 2 C 0.04 1.00 5.49 -17.52 -0.10 0.90 16 3 Si 0.94 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.39 -11.14 9.48 30.87 0.29 -10.85 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 9 O -0.19 -5.58 9.75 -0.06 0.00 -5.58 16 10 C 0.12 2.97 6.64 -39.15 -0.26 2.71 16 11 C -0.19 -4.36 9.16 -39.45 -0.36 -4.72 16 12 C -0.14 -2.68 9.87 -39.37 -0.39 -3.07 16 13 C 0.13 2.29 6.48 -83.61 -0.54 1.75 16 14 C -0.11 -2.03 5.76 -104.44 -0.60 -2.63 16 15 C -0.16 -3.43 9.60 -39.33 -0.38 -3.81 16 16 C -0.07 -1.00 5.78 -28.01 -0.16 -1.16 16 17 C -0.14 -1.62 6.11 -26.59 -0.16 -1.78 16 18 C 0.13 1.54 7.11 -3.59 -0.03 1.51 16 19 N -0.76 -10.90 5.80 -58.02 -0.34 -11.24 16 20 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 22 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 23 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 24 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.39 4.76 8.86 -40.82 -0.36 4.40 16 LS Contribution 254.55 15.07 3.84 3.84 Total: -1.00 -31.98 254.55 -6.90 -38.87 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -3.45 Total: 4.65 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -2.68 Total: -21.14 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.42 Total: -36.78 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.00 Total: -5.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.98 -6.90 -38.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514187.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.453 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds