Wall clock time and date at job start Mon Mar 30 2020 03:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38236 * 120.51574 * 269.71600 * 10 9 7 12 12 N 1.31663 * 120.71413 * 179.83697 * 11 10 9 13 13 C 1.32376 * 122.10153 * 0.58979 * 12 11 10 14 14 C 1.37843 * 120.31366 * 359.54752 * 13 12 11 15 15 C 1.38517 * 120.52226 * 90.00142 * 10 9 7 16 16 C 1.50519 * 121.79921 * 180.34409 * 14 13 12 17 17 O 1.42754 * 110.23668 * 344.13467 * 16 14 13 18 18 C 1.43209 * 113.08902 * 51.50553 * 17 16 14 19 19 C 1.50852 * 118.58900 * 179.41362 * 13 12 11 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08004 * 119.64457 * 0.10462 * 11 10 9 24 24 H 1.07997 * 120.68404 * 359.86942 * 15 10 9 25 25 H 1.09002 * 109.33838 * 104.36924 * 16 14 13 26 26 H 1.09002 * 109.33875 * 224.05121 * 16 14 13 27 27 H 1.09001 * 109.62902 * 49.06035 * 18 17 16 28 28 H 1.08995 * 109.62529 * 169.63780 * 18 17 16 29 29 H 1.09006 * 109.42274 * 42.88725 * 19 13 12 30 30 H 1.09004 * 109.36908 * 283.03705 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2483 -3.2724 1.2039 12 7 4.6841 -4.5148 1.2127 13 6 4.9270 -5.1831 0.0962 14 6 4.7179 -4.5888 -1.1299 15 6 4.2533 -3.2806 -1.1802 16 6 4.9758 -5.3199 -2.4200 17 8 5.7725 -6.4798 -2.1795 18 6 5.2498 -7.3146 -1.1399 19 6 5.4373 -6.5989 0.1988 20 1 -0.4849 0.8400 0.0004 21 1 3.8786 -0.6821 -0.8838 22 1 3.8711 -0.6785 0.8962 23 1 4.0681 -2.7629 2.1390 24 1 4.0819 -2.7927 -2.1284 25 1 4.0252 -5.6200 -2.8611 26 1 5.5016 -4.6600 -3.1100 27 1 4.1889 -7.4944 -1.3134 28 1 5.7874 -8.2626 -1.1266 29 1 4.8832 -7.1287 0.9737 30 1 6.4964 -6.5838 0.4565 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260521601.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:08 Heat of formation + Delta-G solvation = -24.411952 kcal Electronic energy + Delta-G solvation = -14236.154272 eV Core-core repulsion = 11802.772398 eV Total energy + Delta-G solvation = -2433.381874 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.38282 -37.94543 -34.14898 -32.63850 -32.03106 -30.99909 -27.78549 -25.64764 -24.14286 -22.42333 -21.96386 -19.70107 -16.88590 -16.79983 -16.49844 -15.91481 -15.10910 -14.59900 -14.32945 -14.04289 -13.38862 -13.10464 -12.64305 -12.42007 -12.05997 -11.94051 -11.86322 -11.59313 -10.88745 -10.75059 -10.49962 -10.14727 -9.76302 -9.53066 -8.96493 -8.90906 -8.66291 -8.03159 -6.16408 -4.17180 1.56602 1.80469 3.22413 3.30980 3.32747 3.83155 4.22089 4.33276 4.52380 4.84694 4.90456 5.14316 5.16101 5.26639 5.39030 5.54623 5.57969 5.59164 5.72627 5.86709 5.96392 6.03270 6.29016 6.59438 6.65484 6.86461 7.06846 7.20573 7.25773 7.57376 8.37348 8.45703 8.87061 9.42800 10.96318 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.051989 B = 0.006729 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.447354 B = 4160.319334 C = 4298.411881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.073 0.927 9 C 0.020 3.980 10 C -0.077 4.077 11 C 0.100 3.900 12 N -0.487 5.487 13 C 0.104 3.896 14 C -0.174 4.174 15 C -0.075 4.075 16 C 0.109 3.891 17 O -0.378 6.378 18 C 0.060 3.940 19 C -0.095 4.095 20 H 0.266 0.734 21 H 0.026 0.974 22 H 0.032 0.968 23 H 0.155 0.845 24 H 0.133 0.867 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.300 -9.953 -2.745 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.018 4.018 10 C -0.079 4.079 11 C -0.058 4.058 12 N -0.195 5.195 13 C -0.033 4.033 14 C -0.176 4.176 15 C -0.101 4.101 16 C 0.032 3.968 17 O -0.297 6.297 18 C -0.017 4.017 19 C -0.133 4.133 20 H 0.076 0.924 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.172 0.828 24 H 0.151 0.849 25 H 0.083 0.917 26 H 0.122 0.878 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.447 -10.301 -2.040 14.812 hybrid contribution -0.256 1.564 -0.574 1.686 sum 10.191 -8.737 -2.614 13.675 Atomic orbital electron populations 1.69893 1.06295 1.27158 1.50119 1.24993 0.94752 0.99076 0.94263 0.86792 0.80408 0.83543 0.78708 1.20092 1.21103 1.18859 1.20881 0.88015 0.94727 1.52023 0.90926 1.18748 0.97568 0.87715 0.97786 1.21238 0.94128 0.99492 0.93007 1.22613 0.95182 0.89741 0.98283 1.67429 1.12345 1.09058 1.30692 1.20568 0.98535 0.96074 0.88090 1.20949 1.03786 0.96338 0.96573 1.21303 0.96648 0.92921 0.99224 1.21326 0.95792 0.86309 0.93344 1.88037 1.51107 1.34998 1.55508 1.22644 0.99279 0.93567 0.86222 1.20917 1.02224 0.91371 0.98795 0.92445 0.95545 0.94938 0.82808 0.84935 0.91673 0.87826 0.92555 0.88195 0.89288 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 7 C -0.52 -14.35 9.65 -34.44 -0.33 -14.68 16 8 H 0.07 2.22 7.98 -52.49 -0.42 1.80 16 9 C 0.02 0.45 4.20 -29.03 -0.12 0.33 16 10 C -0.08 -1.60 5.09 -104.52 -0.53 -2.13 16 11 C 0.10 1.99 10.87 -17.62 -0.19 1.80 16 12 N -0.49 -9.34 10.23 -9.45 -0.10 -9.43 16 13 C 0.10 1.79 6.67 -82.43 -0.55 1.24 16 14 C -0.17 -2.93 5.80 -104.60 -0.61 -3.54 16 15 C -0.08 -1.39 9.50 -39.23 -0.37 -1.76 16 16 C 0.11 1.48 6.67 35.92 0.24 1.72 16 17 O -0.38 -5.11 10.81 -35.23 -0.38 -5.50 16 18 C 0.06 0.68 6.84 37.13 0.25 0.93 16 19 C -0.10 -1.25 6.24 -27.83 -0.17 -1.42 16 20 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.03 0.59 7.53 -51.93 -0.39 0.20 16 22 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 23 H 0.15 2.86 8.06 -52.48 -0.42 2.43 16 24 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 256.09 15.07 3.86 3.86 Total: -1.00 -31.08 256.09 -6.73 -37.81 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -3.73 Total: -1.08 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -2.48 Total: -15.59 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.68 Total: -35.62 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.38 Total: -5.50 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.08 -6.73 -37.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260521601.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.395 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds