Wall clock time and date at job start Mon Mar 30 2020 03:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38236 * 120.51574 * 269.71600 * 10 9 7 12 12 N 1.31663 * 120.71413 * 179.83697 * 11 10 9 13 13 C 1.32376 * 122.10153 * 0.58979 * 12 11 10 14 14 C 1.37843 * 120.31366 * 359.54752 * 13 12 11 15 15 C 1.38517 * 120.52226 * 90.00142 * 10 9 7 16 16 C 1.50519 * 121.79921 * 180.34409 * 14 13 12 17 17 O 1.42754 * 110.23668 * 344.13467 * 16 14 13 18 18 C 1.43209 * 113.08902 * 51.50553 * 17 16 14 19 19 C 1.50852 * 118.58900 * 179.41362 * 13 12 11 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08004 * 119.64457 * 0.10462 * 11 10 9 24 24 H 1.07997 * 120.68404 * 359.86942 * 15 10 9 25 25 H 1.09002 * 109.33838 * 104.36924 * 16 14 13 26 26 H 1.09002 * 109.33875 * 224.05121 * 16 14 13 27 27 H 1.09001 * 109.62902 * 49.06035 * 18 17 16 28 28 H 1.08995 * 109.62529 * 169.63780 * 18 17 16 29 29 H 1.09006 * 109.42274 * 42.88725 * 19 13 12 30 30 H 1.09004 * 109.36908 * 283.03705 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2483 -3.2724 1.2039 12 7 4.6841 -4.5148 1.2127 13 6 4.9270 -5.1831 0.0962 14 6 4.7179 -4.5888 -1.1299 15 6 4.2533 -3.2806 -1.1802 16 6 4.9758 -5.3199 -2.4200 17 8 5.7725 -6.4798 -2.1795 18 6 5.2498 -7.3146 -1.1399 19 6 5.4373 -6.5989 0.1988 20 1 -0.4849 0.8400 0.0004 21 1 3.8786 -0.6821 -0.8838 22 1 3.8711 -0.6785 0.8962 23 1 4.0681 -2.7629 2.1390 24 1 4.0819 -2.7927 -2.1284 25 1 4.0252 -5.6200 -2.8611 26 1 5.5016 -4.6600 -3.1100 27 1 4.1889 -7.4944 -1.3134 28 1 5.7874 -8.2626 -1.1266 29 1 4.8832 -7.1287 0.9737 30 1 6.4964 -6.5838 0.4565 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260521601.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:07 Heat of formation + Delta-G solvation = -45.096136 kcal Electronic energy + Delta-G solvation = -14237.051206 eV Core-core repulsion = 11802.772398 eV Total energy + Delta-G solvation = -2434.278808 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.69794 -39.10037 -35.85862 -34.33439 -33.41784 -32.40373 -29.44568 -26.88253 -25.63636 -23.78300 -23.51726 -21.09033 -19.01964 -18.06136 -17.69976 -17.11306 -16.49971 -16.05868 -15.77536 -15.43753 -14.88479 -14.37369 -14.27666 -13.80871 -13.75587 -13.51724 -13.18918 -12.80068 -12.53350 -12.29478 -12.01969 -11.74016 -11.60645 -10.92946 -10.82717 -10.38390 -10.29724 -9.51642 -8.32925 -6.39619 0.14406 0.33782 1.36927 1.39143 1.50606 2.33605 2.75656 2.88583 3.01638 3.30810 3.64049 3.76301 3.97331 4.16322 4.24930 4.28630 4.42171 4.48557 4.54668 4.68494 4.79211 4.88581 4.98482 5.05827 5.06935 5.25602 5.50232 5.57420 5.78820 6.07616 6.19982 6.66028 7.00307 7.24475 8.83588 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.051989 B = 0.006729 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.447354 B = 4160.319334 C = 4298.411881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.524 4.524 8 H 0.024 0.976 9 C 0.028 3.972 10 C -0.107 4.107 11 C 0.085 3.915 12 N -0.501 5.501 13 C 0.095 3.905 14 C -0.174 4.174 15 C -0.080 4.080 16 C 0.111 3.889 17 O -0.385 6.385 18 C 0.059 3.941 19 C -0.094 4.094 20 H 0.269 0.731 21 H 0.039 0.961 22 H 0.038 0.962 23 H 0.156 0.844 24 H 0.146 0.854 25 H 0.079 0.921 26 H 0.123 0.877 27 H 0.061 0.939 28 H 0.135 0.865 29 H 0.099 0.901 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.302 -10.511 -3.617 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.562 4.562 8 H 0.043 0.957 9 C -0.010 4.010 10 C -0.109 4.109 11 C -0.073 4.073 12 N -0.210 5.210 13 C -0.042 4.042 14 C -0.176 4.176 15 C -0.106 4.106 16 C 0.034 3.966 17 O -0.304 6.304 18 C -0.017 4.017 19 C -0.132 4.132 20 H 0.078 0.922 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.173 0.827 24 H 0.164 0.836 25 H 0.097 0.903 26 H 0.140 0.860 27 H 0.079 0.921 28 H 0.152 0.848 29 H 0.117 0.883 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.467 -10.877 -2.911 16.799 hybrid contribution -0.902 1.560 -0.302 1.827 sum 11.565 -9.318 -3.213 15.195 Atomic orbital electron populations 1.70054 1.08417 1.28433 1.51870 1.25985 0.95586 1.03451 0.93700 0.85630 0.79526 0.77873 0.79497 1.18752 1.20966 1.16698 1.21094 0.90629 0.92951 1.51530 0.95728 1.18576 0.94280 0.89797 0.98355 1.21123 0.96503 0.98865 0.94378 1.22680 0.95864 0.90424 0.98289 1.67495 1.12905 1.08709 1.31857 1.21394 0.97201 0.97770 0.87834 1.21356 1.02283 0.95757 0.98188 1.21536 0.96245 0.93819 0.99015 1.21438 0.96905 0.86555 0.91685 1.88043 1.51405 1.34888 1.56027 1.22866 1.00262 0.94171 0.84438 1.21079 1.02676 0.88936 1.00525 0.92241 0.94324 0.94411 0.82668 0.83617 0.90285 0.85951 0.92072 0.84751 0.88252 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 2 C 0.01 0.59 5.47 84.66 0.46 1.05 16 3 Si 0.95 42.62 27.47 68.60 1.88 44.51 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 7 C -0.52 -29.81 9.65 25.60 0.25 -29.57 16 8 H 0.02 1.58 7.98 -2.91 -0.02 1.56 16 9 C 0.03 1.28 4.20 29.10 0.12 1.40 16 10 C -0.11 -4.46 5.09 -19.80 -0.10 -4.56 16 11 C 0.08 3.43 10.87 84.72 0.92 4.35 16 12 N -0.50 -19.04 10.23 -183.80 -1.88 -20.92 16 13 C 0.09 3.14 6.67 42.43 0.28 3.42 16 14 C -0.17 -5.56 5.80 -19.85 -0.12 -5.67 16 15 C -0.08 -2.92 9.50 22.50 0.21 -2.71 16 16 C 0.11 2.69 6.67 71.18 0.47 3.16 16 17 O -0.39 -9.10 10.81 -148.98 -1.61 -10.71 16 18 C 0.06 1.13 6.84 71.97 0.49 1.62 16 19 C -0.09 -2.23 6.24 29.88 0.19 -2.04 16 20 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 21 H 0.04 1.67 7.53 -2.38 -0.02 1.65 16 22 H 0.04 1.68 7.14 -2.39 -0.02 1.66 16 23 H 0.16 5.95 8.06 -2.91 -0.02 5.93 16 24 H 0.15 4.76 8.06 -2.91 -0.02 4.73 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.06 1.13 8.07 -2.39 -0.02 1.11 16 28 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.10 2.15 8.14 -2.38 -0.02 2.14 16 30 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -68.32 256.09 2.95 -65.37 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.07 Total: 9.63 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 3.19 Total: -29.55 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -1.58 Total: -79.25 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -1.61 Total: -10.71 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.51 kcal Total: -68.32 2.95 -65.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260521601.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.272 kcal (2) G-P(sol) polarization free energy of solvation -68.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds