Wall clock time and date at job start Mon Mar 30 2020 02:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00286 * 2 1 4 4 H 1.48496 * 109.46993 * 240.00239 * 3 2 1 5 5 H 1.48501 * 109.46752 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46833 * 120.00041 * 3 2 1 7 7 C 1.37884 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00121 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47456 * 180.02562 * 9 7 2 11 11 C 1.35895 * 117.00371 * 180.02562 * 10 9 7 12 12 C 1.38809 * 119.94309 * 359.97438 * 11 10 9 13 13 C 1.38128 * 119.77842 * 180.02562 * 12 11 10 14 14 C 1.38225 * 120.22294 * 359.97438 * 13 12 11 15 15 C 1.38646 * 120.56184 * 359.74613 * 14 13 12 16 16 C 1.38316 * 119.94595 * 180.02562 * 11 10 9 17 17 N 1.39579 * 111.64824 * 180.32014 * 15 14 13 18 18 C 1.46523 * 110.09197 * 0.25327 * 17 15 14 19 19 C 1.51238 * 130.91267 * 180.02562 * 14 13 12 20 20 H 0.97004 * 119.99985 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47060 * 59.99660 * 9 7 2 22 22 H 1.09000 * 109.47189 * 300.00520 * 9 7 2 23 23 H 1.08006 * 120.10860 * 359.97438 * 12 11 10 24 24 H 1.07999 * 119.89159 * 179.97438 * 13 12 11 25 25 H 1.08002 * 119.87608 * 359.97438 * 16 11 10 26 26 H 0.97003 * 124.95604 * 180.28152 * 17 15 14 27 27 H 1.09005 * 110.29644 * 118.92864 * 18 17 15 28 28 H 1.08998 * 110.30504 * 240.97279 * 18 17 15 29 29 H 1.08990 * 110.42484 * 298.74416 * 19 14 13 30 30 H 1.08995 * 110.41927 * 61.21921 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.6601 -4.8411 -0.0011 12 6 0.2838 -5.0217 -0.0011 13 6 -0.2404 -6.2996 -0.0011 14 6 0.6005 -7.3966 -0.0016 15 6 1.9768 -7.2298 -0.0075 16 6 2.5037 -5.9373 -0.0006 17 7 2.6440 -8.4558 -0.0143 18 6 1.6760 -9.5557 -0.0193 19 6 0.2959 -8.8780 -0.0023 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 -0.3749 -4.1657 -0.0002 24 1 -1.3110 -6.4421 -0.0006 25 1 3.5740 -5.7924 -0.0002 26 1 3.6080 -8.5639 -0.0152 27 1 1.7968 -10.1616 -0.9173 28 1 1.7991 -10.1719 0.8713 29 1 -0.2617 -9.1521 0.8931 30 1 -0.2624 -9.1511 -0.8977 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260589092.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:40 Heat of formation + Delta-G solvation = -13.354354 kcal Electronic energy + Delta-G solvation = -13953.797820 eV Core-core repulsion = 11520.895439 eV Total energy + Delta-G solvation = -2432.902381 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00823 -38.00728 -34.81031 -32.85449 -31.50401 -28.80446 -28.37010 -26.90123 -23.21053 -22.51748 -21.44571 -20.31982 -17.44458 -16.84395 -15.87327 -15.48562 -15.08380 -14.90368 -14.43207 -14.14794 -13.33298 -13.03376 -12.61960 -12.11489 -12.06720 -11.94737 -11.60890 -11.21562 -11.01180 -10.97975 -10.39665 -10.29071 -10.15034 -9.42173 -9.22385 -8.55358 -7.60459 -6.95373 -6.20618 -4.24088 1.97284 2.11631 3.28732 3.31335 3.34562 3.49755 4.24818 4.31868 4.67613 4.80602 4.94075 5.12347 5.16397 5.38742 5.57874 5.67741 5.92595 5.95654 6.00933 6.09654 6.33799 6.70289 6.76952 6.97478 7.01777 7.16003 7.22361 7.53615 7.72881 7.99627 8.01517 8.56193 8.89574 9.40792 10.90605 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.077626 B = 0.005497 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.616310 B = 5092.141341 C = 5426.881953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.913 3.087 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.069 0.931 9 C 0.194 3.806 10 O -0.317 6.317 11 C 0.194 3.806 12 C -0.255 4.255 13 C -0.025 4.025 14 C -0.232 4.232 15 C 0.224 3.776 16 C -0.231 4.231 17 N -0.750 5.750 18 C 0.122 3.878 19 C -0.073 4.073 20 H 0.267 0.733 21 H 0.022 0.978 22 H 0.022 0.978 23 H 0.133 0.867 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.408 0.592 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.838 -15.929 -0.024 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.088 0.912 9 C 0.121 3.879 10 O -0.230 6.230 11 C 0.145 3.855 12 C -0.276 4.276 13 C -0.044 4.044 14 C -0.237 4.237 15 C 0.122 3.878 16 C -0.255 4.255 17 N -0.384 5.384 18 C -0.003 4.003 19 C -0.111 4.111 20 H 0.077 0.923 21 H 0.040 0.960 22 H 0.040 0.960 23 H 0.151 0.849 24 H 0.134 0.866 25 H 0.137 0.863 26 H 0.245 0.755 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.842 -15.870 -0.025 15.893 hybrid contribution 0.530 0.884 -0.002 1.031 sum 1.372 -14.986 -0.026 15.049 Atomic orbital electron populations 1.69944 1.06115 1.27643 1.49590 1.24926 0.95031 0.99469 0.94727 0.86312 0.79280 0.81474 0.78959 1.19877 1.21005 1.19882 1.20957 0.94224 0.88844 1.52211 0.91249 1.20637 0.88628 0.81629 0.96990 1.86086 1.39238 1.11850 1.85810 1.18717 0.91210 0.85818 0.89776 1.21183 0.94647 0.97924 1.13816 1.20033 0.98374 0.90581 0.95362 1.19580 0.92664 0.94446 1.16978 1.17853 0.91277 0.86066 0.92635 1.19326 0.99317 0.88297 1.18530 1.44618 1.07219 1.02801 1.83775 1.21695 0.88495 0.89551 1.00515 1.20847 0.96151 0.91884 1.02199 0.92317 0.95981 0.95995 0.84897 0.86631 0.86274 0.75465 0.92085 0.92214 0.90611 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -15.26 9.43 -34.44 -0.32 -15.58 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.19 5.30 4.49 36.00 0.16 5.46 16 10 O -0.32 -8.03 10.11 -19.41 -0.20 -8.23 16 11 C 0.19 4.22 6.67 -39.34 -0.26 3.96 16 12 C -0.26 -5.15 9.04 -39.41 -0.36 -5.50 16 13 C -0.02 -0.42 10.03 -39.63 -0.40 -0.82 16 14 C -0.23 -3.66 6.23 -104.21 -0.65 -4.31 16 15 C 0.22 3.69 7.03 -83.68 -0.59 3.10 16 16 C -0.23 -4.39 10.01 -39.05 -0.39 -4.78 16 17 N -0.75 -9.45 6.53 -58.13 -0.38 -9.83 16 18 C 0.12 1.24 7.96 -3.64 -0.03 1.21 16 19 C -0.07 -0.84 6.94 -27.23 -0.19 -1.03 16 20 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.02 0.62 7.66 -51.93 -0.40 0.23 16 22 H 0.02 0.62 7.66 -51.93 -0.40 0.22 16 23 H 0.13 2.79 6.30 -52.48 -0.33 2.46 16 24 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 25 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 26 H 0.41 4.25 8.96 -40.82 -0.37 3.88 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 259.45 15.07 3.91 3.91 Total: -1.00 -31.03 259.45 -7.65 -38.67 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -3.57 Total: 1.15 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -3.12 Total: -16.67 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.36 Total: -35.31 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.20 Total: -8.23 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.03 -7.65 -38.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260589092.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.319 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds