Wall clock time and date at job start Mon Mar 30 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00056 * 2 1 4 4 H 1.48498 * 109.46882 * 270.00254 * 3 2 1 5 5 H 1.48503 * 109.47073 * 30.00325 * 3 2 1 6 6 H 1.48497 * 109.47040 * 150.00187 * 3 2 1 7 7 C 1.37876 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00056 * 185.71603 * 7 2 1 9 9 C 1.50696 * 120.00049 * 5.72136 * 7 2 1 10 10 H 1.09000 * 109.43309 * 334.96796 * 9 7 2 11 11 C 1.53070 * 109.40047 * 94.85316 * 9 7 2 12 12 C 1.53410 * 108.30167 * 168.25382 * 11 9 7 13 13 O 1.42833 * 108.35375 * 295.33878 * 12 11 9 14 14 C 1.35955 * 117.85136 * 49.13181 * 13 12 11 15 15 C 1.39741 * 118.48253 * 162.94346 * 14 13 12 16 16 N 1.39969 * 119.95545 * 359.69151 * 15 14 13 17 17 C 1.38535 * 120.09516 * 179.67510 * 15 14 13 18 18 C 1.38267 * 119.86590 * 0.05434 * 17 15 14 19 19 C 1.38059 * 120.04138 * 0.06180 * 18 17 15 20 20 C 1.38119 * 121.84685 * 342.78928 * 14 13 12 21 21 H 0.97008 * 120.00126 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.69645 * 287.95925 * 11 9 7 23 23 H 1.09000 * 109.69362 * 48.50782 * 11 9 7 24 24 H 1.08998 * 109.68559 * 55.05703 * 12 11 9 25 25 H 1.09003 * 109.68362 * 175.58715 * 12 11 9 26 26 H 0.96994 * 119.99977 * 0.02562 * 16 15 14 27 27 H 0.96999 * 119.99795 * 179.97438 * 16 15 14 28 28 H 1.07993 * 120.06552 * 180.02562 * 17 15 14 29 29 H 1.08009 * 119.98172 * 180.08981 * 18 17 15 30 30 H 1.08006 * 119.77492 * 180.22184 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0805 -1.1965 0.0926 9 6 1.2566 -2.4958 -0.1312 10 1 0.2345 -2.3640 0.2239 11 6 1.2340 -2.9239 -1.6007 12 6 0.7370 -4.3735 -1.6725 13 8 1.6919 -5.2093 -1.0170 14 6 2.1178 -4.8383 0.2196 15 6 2.7522 -5.7921 1.0199 16 7 2.9301 -7.0965 0.5446 17 6 3.2056 -5.4484 2.2831 18 6 3.0282 -4.1596 2.7512 19 6 2.3994 -3.2178 1.9615 20 6 1.9425 -3.5537 0.6958 21 1 -0.4851 0.8401 0.0004 22 1 0.5602 -2.2762 -2.1617 23 1 2.2388 -2.8582 -2.0179 24 1 -0.2280 -4.4560 -1.1724 25 1 0.6374 -4.6762 -2.7149 26 1 2.6135 -7.3378 -0.3399 27 1 3.3707 -7.7590 1.0995 28 1 3.6961 -6.1858 2.9010 29 1 3.3823 -3.8892 3.7351 30 1 2.2663 -2.2113 2.3300 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260628157.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:40 Heat of formation + Delta-G solvation = -24.905863 kcal Electronic energy + Delta-G solvation = -14770.458568 eV Core-core repulsion = 12337.055276 eV Total energy + Delta-G solvation = -2433.403292 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.78568 -36.79557 -34.89843 -33.02729 -31.23061 -29.73428 -27.56530 -26.17603 -23.21609 -22.68803 -20.87683 -19.05014 -17.03211 -16.50178 -16.27246 -15.88919 -14.70262 -14.49341 -14.25741 -13.73688 -12.88242 -12.68474 -12.61510 -12.44874 -11.75664 -11.26788 -10.99199 -10.88893 -10.80471 -10.35102 -10.23809 -9.86728 -9.70786 -9.16382 -8.97260 -8.54608 -7.40793 -6.62202 -6.08425 -4.10845 2.25303 2.42169 3.28089 3.35230 3.39273 4.05468 4.38412 4.46179 4.71104 5.20094 5.60878 5.81215 5.89786 5.91518 6.03807 6.15071 6.20461 6.41600 6.59454 6.78800 6.88611 6.95829 7.27588 7.37571 7.61666 7.66571 7.80248 7.83409 7.89100 8.28622 8.32597 8.42194 8.97246 9.51985 11.00149 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.035971 B = 0.009896 C = 0.008294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.219410 B = 2828.748124 C = 3375.041557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.502 4.502 8 H 0.058 0.942 9 C 0.066 3.934 10 H 0.075 0.925 11 C -0.142 4.142 12 C 0.061 3.939 13 O -0.332 6.332 14 C 0.040 3.960 15 C 0.179 3.821 16 N -0.884 5.884 17 C -0.197 4.197 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.071 4.071 21 H 0.263 0.737 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.397 0.603 27 H 0.389 0.611 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 -9.221 0.762 9.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.047 3.953 10 H 0.093 0.907 11 C -0.180 4.180 12 C -0.014 4.014 13 O -0.248 6.248 14 C -0.008 4.008 15 C 0.077 3.923 16 N -0.426 5.426 17 C -0.220 4.220 18 C -0.138 4.138 19 C -0.141 4.141 20 C -0.073 4.073 21 H 0.072 0.928 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.105 0.895 26 H 0.225 0.775 27 H 0.216 0.784 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.781 -9.176 0.673 9.612 hybrid contribution 0.395 0.823 -0.138 0.923 sum 3.176 -8.353 0.535 8.952 Atomic orbital electron populations 1.69909 1.05956 1.26838 1.50405 1.24992 0.94866 0.99265 0.94640 0.86578 0.79974 0.83229 0.78201 1.20622 1.21226 1.19716 1.20956 0.93341 0.89456 1.50206 0.92374 1.17978 0.98019 0.90641 0.88623 0.90685 1.22365 1.00891 0.93088 1.01649 1.22980 0.90363 0.92269 0.95805 1.85725 1.59300 1.51367 1.28366 1.18244 1.03867 0.92511 0.86139 1.17241 0.98463 0.84332 0.92258 1.42171 1.70190 1.08994 1.21200 1.20132 1.09182 0.97661 0.94989 1.20728 1.00684 0.92984 0.99358 1.20907 0.99766 0.99628 0.93792 1.20560 0.98339 0.92278 0.96132 0.92769 0.91150 0.92340 0.93041 0.89491 0.77511 0.78428 0.87060 0.87139 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 12.77 55.43 0.71 -24.45 16 2 C 0.06 1.74 5.45 -17.82 -0.10 1.64 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.50 -13.49 7.00 -34.44 -0.24 -13.73 16 8 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 9 C 0.07 1.64 2.45 -92.85 -0.23 1.41 16 10 H 0.08 2.07 7.23 -51.93 -0.38 1.69 16 11 C -0.14 -3.14 5.49 -26.48 -0.15 -3.29 16 12 C 0.06 1.15 7.03 37.37 0.26 1.41 16 13 O -0.33 -6.65 9.42 -19.60 -0.18 -6.84 16 14 C 0.04 0.84 6.49 -39.06 -0.25 0.59 16 15 C 0.18 3.31 6.77 -83.47 -0.57 2.75 16 16 N -0.88 -12.83 9.08 32.56 0.30 -12.54 16 17 C -0.20 -3.42 9.89 -39.46 -0.39 -3.81 16 18 C -0.12 -2.20 10.04 -39.64 -0.40 -2.59 16 19 C -0.12 -2.64 9.10 -39.48 -0.36 -3.00 16 20 C -0.07 -1.65 5.42 -104.46 -0.57 -2.21 16 21 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 22 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 23 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.40 5.55 8.09 -40.82 -0.33 5.22 16 27 H 0.39 4.47 8.84 -40.82 -0.36 4.11 16 28 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.13 2.89 7.35 -52.48 -0.39 2.50 16 LS Contribution 253.54 15.07 3.82 3.82 Total: -1.00 -28.93 253.54 -6.90 -35.82 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -3.53 Total: 9.04 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -2.98 Total: -20.84 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 1.00 Total: -36.99 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.18 Total: -6.84 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.93 -6.90 -35.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260628157.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.917 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds