Wall clock time and date at job start Mon Mar 30 2020 03:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48507 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47088 * 299.99246 * 3 2 1 6 6 H 1.48495 * 109.47527 * 59.99471 * 3 2 1 7 7 C 1.37875 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99744 * 0.02562 * 7 2 1 10 10 C 1.50694 * 112.74840 * 50.33348 * 9 7 2 11 11 C 1.38289 * 119.97366 * 98.45724 * 10 9 7 12 12 C 1.38243 * 120.11362 * 180.28436 * 11 10 9 13 13 C 1.38163 * 120.05438 * 359.97438 * 12 11 10 14 14 C 1.38708 * 119.94499 * 0.02562 * 13 12 11 15 15 O 1.35899 * 120.05461 * 179.97438 * 14 13 12 16 16 C 1.38125 * 119.97418 * 278.73256 * 10 9 7 17 17 C 1.53521 * 113.52721 * 181.15378 * 9 7 2 18 18 C 1.53515 * 83.57642 * 88.75321 * 17 9 7 19 19 N 1.47480 * 87.93242 * 26.02330 * 18 17 9 20 20 H 0.97003 * 119.99693 * 0.02562 * 1 2 3 21 21 H 1.08004 * 119.94567 * 0.25339 * 11 10 9 22 22 H 1.08001 * 119.97538 * 179.97438 * 12 11 10 23 23 H 1.08001 * 120.02724 * 180.02562 * 13 12 11 24 24 H 0.96699 * 114.00749 * 270.02413 * 15 14 13 25 25 H 1.08000 * 120.02328 * 359.69765 * 16 10 9 26 26 H 1.09003 * 114.16907 * 202.39605 * 17 9 7 27 27 H 1.08991 * 114.16979 * 335.10496 * 17 9 7 28 28 H 1.08998 * 113.47064 * 271.26020 * 18 17 9 29 29 H 1.08998 * 113.47815 * 140.79060 * 18 17 9 30 30 H 1.00901 * 111.00233 * 221.30028 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 0.1918 -2.5604 -1.0696 11 6 0.4527 -3.2072 -2.2637 12 6 -0.5148 -3.2600 -3.2498 13 6 -1.7456 -2.6669 -3.0441 14 6 -2.0098 -2.0175 -1.8472 15 8 -3.2194 -1.4328 -1.6427 16 6 -1.0370 -1.9655 -0.8593 17 6 2.1632 -3.7335 0.0295 18 6 2.0606 -3.5600 1.5514 19 7 0.7621 -2.8953 1.3344 20 1 -0.4850 0.8401 -0.0004 21 1 1.4142 -3.6714 -2.4265 22 1 -0.3085 -3.7654 -4.1817 23 1 -2.5012 -2.7088 -3.8145 24 1 -3.2628 -0.5091 -1.9255 25 1 -1.2404 -1.4609 0.0736 26 1 1.6958 -4.6429 -0.3484 27 1 3.1611 -3.5605 -0.3732 28 1 2.8226 -2.8996 1.9653 29 1 1.9807 -4.5033 2.0916 30 1 0.6622 -2.0917 1.9363 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260638864.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:51 Heat of formation + Delta-G solvation = 2.722391 kcal Electronic energy + Delta-G solvation = -15021.671030 eV Core-core repulsion = 12589.465789 eV Total energy + Delta-G solvation = -2432.205241 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97869 -39.48480 -37.03855 -34.61954 -31.52658 -30.43831 -28.25907 -27.95220 -25.10882 -22.95781 -22.47400 -20.45253 -19.13015 -18.11363 -17.14537 -16.83159 -16.22453 -16.04896 -15.84670 -15.19808 -14.49886 -14.36987 -13.59388 -13.13702 -13.02904 -12.83234 -12.53399 -12.46854 -12.38322 -12.26746 -11.89067 -11.63766 -11.05821 -10.92472 -10.57551 -9.45288 -9.30799 -9.09322 -7.83485 -6.39593 0.71924 0.98883 1.37734 1.42690 1.50812 2.36165 3.05626 3.17186 3.70078 3.84370 4.03905 4.31473 4.47097 4.49249 4.67852 4.81248 4.93480 5.05818 5.14962 5.21162 5.24936 5.43580 5.54945 5.62432 5.76216 5.85265 6.05417 6.13114 6.29217 6.43043 6.68788 6.91624 7.09033 7.34853 8.80235 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.022459 B = 0.014345 C = 0.010749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.427402 B = 1951.374586 C = 2604.329498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.035 3.965 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.215 3.785 10 C -0.034 4.034 11 C -0.146 4.146 12 C -0.134 4.134 13 C -0.169 4.169 14 C 0.045 3.955 15 O -0.512 6.512 16 C -0.065 4.065 17 C -0.140 4.140 18 C 0.017 3.983 19 N -0.647 5.647 20 H 0.262 0.738 21 H 0.121 0.879 22 H 0.144 0.856 23 H 0.133 0.867 24 H 0.392 0.608 25 H 0.135 0.865 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 -2.581 -3.313 4.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.168 4.168 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.077 0.923 9 C 0.125 3.875 10 C -0.036 4.036 11 C -0.165 4.165 12 C -0.152 4.152 13 C -0.187 4.187 14 C 0.001 3.999 15 O -0.323 6.323 16 C -0.085 4.085 17 C -0.178 4.178 18 C -0.113 4.113 19 N -0.270 5.270 20 H 0.072 0.928 21 H 0.139 0.861 22 H 0.161 0.839 23 H 0.151 0.849 24 H 0.248 0.752 25 H 0.153 0.847 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.353 -3.621 -3.146 4.809 hybrid contribution 1.115 2.450 0.017 2.692 sum 0.762 -1.170 -3.129 3.426 Atomic orbital electron populations 1.70101 1.06221 1.26092 1.48920 1.25709 0.95741 1.01823 0.93478 0.85592 0.79035 0.80046 0.77403 1.19582 1.21094 1.20640 1.21449 0.93014 0.90749 1.52404 0.92283 1.18988 0.89189 0.92300 0.86994 1.19807 0.94031 0.94190 0.95535 1.21104 0.99741 1.01628 0.94007 1.21001 0.93009 1.01602 0.99561 1.21365 0.98209 1.02463 0.96712 1.18829 0.85515 1.00629 0.94918 1.84690 1.30043 1.30789 1.86772 1.21762 0.91625 0.94129 1.00979 1.23264 0.99605 0.98317 0.96568 1.23143 0.92650 0.99097 0.96444 1.67494 1.28436 1.24939 1.06173 0.92784 0.86138 0.83872 0.84936 0.75176 0.84744 0.90283 0.91453 0.92669 0.90205 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.01 8.37 21.45 0.18 -44.83 16 2 C 0.03 1.73 5.33 84.65 0.45 2.19 16 3 Si 0.95 40.78 29.54 68.60 2.03 42.81 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -27.12 7.86 25.60 0.20 -26.91 16 8 H 0.06 2.98 7.81 -2.91 -0.02 2.95 16 9 C 0.21 10.10 0.93 -0.68 0.00 10.10 16 10 C -0.03 -1.63 4.71 -19.88 -0.09 -1.73 16 11 C -0.15 -6.10 9.07 22.28 0.20 -5.90 16 12 C -0.13 -4.92 10.04 22.25 0.22 -4.70 16 13 C -0.17 -6.46 9.99 22.36 0.22 -6.23 16 14 C 0.05 1.97 6.70 22.50 0.15 2.12 16 15 O -0.51 -20.09 13.50 -92.41 -1.25 -21.34 16 16 C -0.06 -3.16 7.14 22.36 0.16 -3.00 16 17 C -0.14 -5.57 6.52 30.94 0.20 -5.37 16 18 C 0.02 0.67 8.28 83.58 0.69 1.36 16 19 N -0.65 -29.62 8.25 -504.69 -4.16 -33.78 16 20 H 0.26 12.94 8.31 -92.71 -0.77 12.17 16 21 H 0.12 4.56 7.25 -2.91 -0.02 4.54 16 22 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 23 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 24 H 0.39 12.00 9.06 -74.06 -0.67 11.33 16 25 H 0.14 7.23 6.03 -2.91 -0.02 7.22 16 26 H 0.08 2.99 7.76 -2.39 -0.02 2.98 16 27 H 0.07 2.54 8.10 -2.39 -0.02 2.52 16 28 H 0.05 2.12 7.99 -2.39 -0.02 2.11 16 29 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.31 14.87 8.54 -89.69 -0.77 14.10 16 Total: -1.00 -56.65 252.66 -1.06 -57.72 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.27 Total: 37.50 kcal Atomic # 6 Polarization: -40.49 SS G_CDS: 2.41 Total: -38.08 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -3.98 Total: -78.61 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.25 Total: -21.34 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -56.65 -1.06 -57.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260638864.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.438 kcal (2) G-P(sol) polarization free energy of solvation -56.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds