Wall clock time and date at job start Mon Mar 30 2020 02:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48499 * 109.47257 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47121 * 119.99529 * 3 2 1 6 6 H 1.48493 * 109.46924 * 239.99444 * 3 2 1 7 7 C 1.37877 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99537 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00014 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.43866 * 59.91130 * 9 7 2 11 11 C 1.53072 * 109.43813 * 299.99492 * 9 7 2 12 12 C 1.53415 * 108.28565 * 191.79741 * 11 9 7 13 13 O 1.42822 * 108.36112 * 64.70290 * 12 11 9 14 14 C 1.35851 * 117.87604 * 310.83256 * 13 12 11 15 15 C 1.39219 * 118.46988 * 197.06433 * 14 13 12 16 16 C 1.38009 * 120.37903 * 180.21271 * 15 14 13 17 17 C 1.38161 * 120.03787 * 359.97438 * 16 15 14 18 18 C 1.38794 * 119.89697 * 359.91981 * 17 16 15 19 19 N 1.39662 * 119.92048 * 180.02562 * 18 17 16 20 20 C 1.38241 * 121.79304 * 17.11567 * 14 13 12 21 21 H 0.97007 * 119.99364 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.70130 * 311.49969 * 11 9 7 23 23 H 1.09003 * 109.70147 * 72.09589 * 11 9 7 24 24 H 1.08992 * 109.68533 * 184.42289 * 12 11 9 25 25 H 1.09000 * 109.67978 * 304.94779 * 12 11 9 26 26 H 1.08005 * 119.81131 * 0.18943 * 15 14 13 27 27 H 1.08005 * 119.98367 * 179.97438 * 16 15 14 28 28 H 1.08002 * 120.04791 * 179.97438 * 17 16 15 29 29 H 0.97006 * 120.00362 * 159.32937 * 19 18 17 30 30 H 0.96998 * 119.99979 * 339.33955 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6962 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6236 -2.5558 -0.8890 11 6 0.3708 -2.5791 1.2504 12 6 -0.1495 -4.0164 1.3815 13 8 0.9654 -4.8792 1.6106 14 6 2.0396 -4.7613 0.7874 15 6 2.9650 -5.8007 0.7510 16 6 4.0730 -5.7203 -0.0679 17 6 4.2693 -4.6043 -0.8583 18 6 3.3496 -3.5652 -0.8288 19 7 3.5473 -2.4370 -1.6280 20 6 2.2313 -3.6444 -0.0043 21 1 -0.4849 0.8402 -0.0004 22 1 0.9584 -2.3192 2.1308 23 1 -0.4694 -1.8916 1.1527 24 1 -0.8423 -4.0810 2.2204 25 1 -0.6576 -4.3082 0.4624 26 1 2.8152 -6.6749 1.3673 27 1 4.7872 -6.5302 -0.0908 28 1 5.1366 -4.5410 -1.4989 29 1 2.7986 -1.8603 -1.8468 30 1 4.4332 -2.2302 -1.9645 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260666102.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:30 Heat of formation + Delta-G solvation = -14.950734 kcal Electronic energy + Delta-G solvation = -15023.063594 eV Core-core repulsion = 12590.091989 eV Total energy + Delta-G solvation = -2432.971605 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.78041 -37.01722 -34.76471 -32.76181 -31.19309 -29.70574 -27.40517 -26.24214 -23.18925 -22.53937 -20.86422 -18.88060 -17.04048 -16.86772 -15.85178 -15.18533 -14.69069 -14.58837 -14.10229 -13.99843 -12.97895 -12.69248 -12.39685 -12.25904 -11.69321 -11.25930 -11.07784 -10.95467 -10.71690 -10.59653 -10.05646 -9.87637 -9.47277 -9.09984 -8.85751 -8.48434 -7.27545 -6.57219 -6.11469 -4.16026 2.28597 2.43704 3.22683 3.29321 3.32143 4.18053 4.32487 4.68016 4.87167 5.24929 5.65461 5.88260 5.89991 6.01486 6.03343 6.14772 6.31631 6.42207 6.66540 6.90457 6.94504 7.19912 7.23506 7.26320 7.52757 7.66245 7.77836 7.90866 8.25095 8.33861 8.53419 8.83149 8.92831 9.47433 10.93879 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.031020 B = 0.012102 C = 0.009215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.429271 B = 2313.080552 C = 3037.902723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.075 0.925 9 C 0.089 3.911 10 H 0.033 0.967 11 C -0.140 4.140 12 C 0.055 3.945 13 O -0.329 6.329 14 C 0.157 3.843 15 C -0.219 4.219 16 C -0.064 4.064 17 C -0.245 4.245 18 C 0.256 3.744 19 N -0.866 5.866 20 C -0.194 4.194 21 H 0.262 0.738 22 H 0.053 0.947 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.416 0.584 30 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 -5.855 -1.060 6.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.093 0.907 9 C 0.071 3.929 10 H 0.051 0.949 11 C -0.178 4.178 12 C -0.020 4.020 13 O -0.243 6.243 14 C 0.111 3.889 15 C -0.239 4.239 16 C -0.083 4.083 17 C -0.269 4.269 18 C 0.150 3.850 19 N -0.409 5.409 20 C -0.199 4.199 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.118 0.882 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.126 0.874 29 H 0.252 0.748 30 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.209 -5.849 -0.898 6.731 hybrid contribution 0.459 1.455 -0.205 1.539 sum 3.668 -4.394 -1.103 5.829 Atomic orbital electron populations 1.69890 1.05950 1.26777 1.50060 1.25034 0.94844 0.99125 0.95035 0.86633 0.79533 0.83021 0.78664 1.21399 1.20330 1.20269 1.21373 0.94002 0.89382 1.50445 0.90680 1.17548 0.91158 0.90054 0.94135 0.94936 1.22257 1.02349 0.93113 1.00063 1.23118 0.86177 0.92089 1.00603 1.85844 1.24881 1.60051 1.53516 1.18529 0.87390 0.92632 0.90304 1.20140 0.97787 0.99106 1.06899 1.20345 0.95991 0.96812 0.95176 1.20434 1.02957 0.95699 1.07775 1.17410 0.92525 0.86418 0.88691 1.43165 1.12784 1.28454 1.56455 1.20081 1.01414 0.97377 1.01026 0.92825 0.92797 0.88227 0.89419 0.93098 0.86990 0.86935 0.87418 0.74756 0.79424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.84 11.49 55.43 0.64 -23.20 16 2 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 3 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.51 -13.10 6.01 -34.44 -0.21 -13.31 16 8 H 0.08 1.92 5.95 -52.48 -0.31 1.60 16 9 C 0.09 2.18 1.95 -92.86 -0.18 2.00 16 10 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 11 C -0.14 -3.27 5.06 -26.48 -0.13 -3.40 16 12 C 0.05 1.10 7.03 37.37 0.26 1.36 16 13 O -0.33 -7.03 10.27 -19.27 -0.20 -7.22 16 14 C 0.16 3.43 6.47 -39.22 -0.25 3.17 16 15 C -0.22 -4.18 9.93 -39.30 -0.39 -4.57 16 16 C -0.06 -1.12 10.03 -39.69 -0.40 -1.51 16 17 C -0.25 -4.46 9.92 -39.40 -0.39 -4.85 16 18 C 0.26 5.30 6.33 -83.74 -0.53 4.77 16 19 N -0.87 -16.45 7.13 32.44 0.23 -16.21 16 20 C -0.19 -4.41 5.44 -104.25 -0.57 -4.98 16 21 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 22 H 0.05 1.33 8.10 -51.93 -0.42 0.91 16 23 H 0.10 2.46 6.51 -51.93 -0.34 2.13 16 24 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 27 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 28 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.42 8.61 6.24 -40.82 -0.25 8.35 16 30 H 0.38 6.02 8.89 -40.82 -0.36 5.66 16 LS Contribution 245.81 15.07 3.70 3.70 Total: -1.00 -27.46 245.81 -6.89 -34.35 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -3.36 Total: 13.09 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -2.88 Total: -19.81 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.87 Total: -39.42 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.20 Total: -7.22 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.46 -6.89 -34.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260666102.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.397 kcal (2) G-P(sol) polarization free energy of solvation -27.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds