Wall clock time and date at job start Mon Mar 30 2020 02:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48499 * 109.47257 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47121 * 119.99529 * 3 2 1 6 6 H 1.48493 * 109.46924 * 239.99444 * 3 2 1 7 7 C 1.37877 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99537 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00014 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.43866 * 59.91130 * 9 7 2 11 11 C 1.53072 * 109.43813 * 299.99492 * 9 7 2 12 12 C 1.53415 * 108.28565 * 191.79741 * 11 9 7 13 13 O 1.42822 * 108.36112 * 64.70290 * 12 11 9 14 14 C 1.35851 * 117.87604 * 310.83256 * 13 12 11 15 15 C 1.39219 * 118.46988 * 197.06433 * 14 13 12 16 16 C 1.38009 * 120.37903 * 180.21271 * 15 14 13 17 17 C 1.38161 * 120.03787 * 359.97438 * 16 15 14 18 18 C 1.38794 * 119.89697 * 359.91981 * 17 16 15 19 19 N 1.39662 * 119.92048 * 180.02562 * 18 17 16 20 20 C 1.38241 * 121.79304 * 17.11567 * 14 13 12 21 21 H 0.97007 * 119.99364 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.70130 * 311.49969 * 11 9 7 23 23 H 1.09003 * 109.70147 * 72.09589 * 11 9 7 24 24 H 1.08992 * 109.68533 * 184.42289 * 12 11 9 25 25 H 1.09000 * 109.67978 * 304.94779 * 12 11 9 26 26 H 1.08005 * 119.81131 * 0.18943 * 15 14 13 27 27 H 1.08005 * 119.98367 * 179.97438 * 16 15 14 28 28 H 1.08002 * 120.04791 * 179.97438 * 17 16 15 29 29 H 0.97006 * 120.00362 * 159.32937 * 19 18 17 30 30 H 0.96998 * 119.99979 * 339.33955 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6962 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6236 -2.5558 -0.8890 11 6 0.3708 -2.5791 1.2504 12 6 -0.1495 -4.0164 1.3815 13 8 0.9654 -4.8792 1.6106 14 6 2.0396 -4.7613 0.7874 15 6 2.9650 -5.8007 0.7510 16 6 4.0730 -5.7203 -0.0679 17 6 4.2693 -4.6043 -0.8583 18 6 3.3496 -3.5652 -0.8288 19 7 3.5473 -2.4370 -1.6280 20 6 2.2313 -3.6444 -0.0043 21 1 -0.4849 0.8402 -0.0004 22 1 0.9584 -2.3192 2.1308 23 1 -0.4694 -1.8916 1.1527 24 1 -0.8423 -4.0810 2.2204 25 1 -0.6576 -4.3082 0.4624 26 1 2.8152 -6.6749 1.3673 27 1 4.7872 -6.5302 -0.0908 28 1 5.1366 -4.5410 -1.4989 29 1 2.7986 -1.8603 -1.8468 30 1 4.4332 -2.2302 -1.9645 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260666102.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:29 Heat of formation + Delta-G solvation = -31.759065 kcal Electronic energy + Delta-G solvation = -15023.792458 eV Core-core repulsion = 12590.091989 eV Total energy + Delta-G solvation = -2433.700469 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.38859 -38.57586 -36.50419 -34.42539 -33.04994 -31.28664 -28.94544 -28.07400 -24.93847 -24.23461 -22.42920 -20.58035 -18.70104 -18.60616 -17.57530 -16.84286 -16.33278 -16.25327 -15.67778 -15.58759 -14.70160 -14.50632 -13.99542 -13.88475 -13.32447 -13.01009 -12.75622 -12.67199 -12.46069 -12.29771 -11.85389 -11.58304 -11.20009 -10.93829 -10.54471 -10.41376 -8.89312 -8.17697 -8.01916 -6.19062 0.76133 0.91589 1.41069 1.43766 1.49960 2.42035 2.61407 3.11070 3.15486 3.51014 4.23850 4.26947 4.29161 4.45680 4.53942 4.57944 4.71591 4.87779 5.10058 5.13764 5.22088 5.50544 5.61532 5.72507 5.78780 5.82766 5.99044 6.13394 6.35038 6.68230 6.87355 7.00164 7.36263 7.47310 8.95161 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.031020 B = 0.012102 C = 0.009215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.429271 B = 2313.080552 C = 3037.902723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.952 3.048 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.091 3.909 10 H 0.000 1.000 11 C -0.133 4.133 12 C 0.062 3.938 13 O -0.334 6.334 14 C 0.134 3.866 15 C -0.224 4.224 16 C -0.051 4.051 17 C -0.241 4.241 18 C 0.240 3.760 19 N -0.864 5.864 20 C -0.231 4.231 21 H 0.260 0.740 22 H 0.032 0.968 23 H 0.080 0.920 24 H 0.119 0.881 25 H 0.054 0.946 26 H 0.133 0.867 27 H 0.157 0.843 28 H 0.139 0.861 29 H 0.406 0.594 30 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.275 -7.021 -1.198 8.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.779 3.221 4 H -0.216 1.216 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.554 4.554 8 H 0.092 0.908 9 C 0.073 3.927 10 H 0.018 0.982 11 C -0.171 4.171 12 C -0.013 4.013 13 O -0.248 6.248 14 C 0.088 3.912 15 C -0.245 4.245 16 C -0.069 4.069 17 C -0.264 4.264 18 C 0.133 3.867 19 N -0.406 5.406 20 C -0.236 4.236 21 H 0.069 0.931 22 H 0.051 0.949 23 H 0.098 0.902 24 H 0.137 0.863 25 H 0.073 0.927 26 H 0.151 0.849 27 H 0.175 0.825 28 H 0.157 0.843 29 H 0.240 0.760 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.070 -7.026 -1.048 8.727 hybrid contribution -0.061 1.743 -0.186 1.754 sum 5.008 -5.283 -1.234 7.384 Atomic orbital electron populations 1.70014 1.07133 1.27202 1.51178 1.25703 0.95522 1.01985 0.95015 0.85701 0.78306 0.79397 0.78728 1.21576 1.20757 1.18913 1.21556 0.93970 0.90134 1.49734 0.90834 1.17384 0.91405 0.90951 0.92976 0.98243 1.22061 1.01215 0.95137 0.98725 1.23120 0.86315 0.89627 1.02238 1.85828 1.25142 1.60029 1.53812 1.18921 0.88200 0.93400 0.90650 1.20502 0.97629 0.98928 1.07422 1.20866 0.95625 0.97367 0.93050 1.20815 1.02973 0.94864 1.07775 1.17687 0.92722 0.87599 0.88707 1.43036 1.13252 1.28061 1.56250 1.20077 1.02487 0.97604 1.03457 0.93051 0.94896 0.90175 0.86281 0.92735 0.84934 0.82506 0.84344 0.75962 0.77626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.56 11.49 21.45 0.25 -50.32 16 2 C 0.02 0.89 5.30 84.65 0.45 1.34 16 3 Si 0.95 42.07 29.54 68.60 2.03 44.09 16 4 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.52 -26.85 6.01 25.60 0.15 -26.69 16 8 H 0.07 3.78 5.95 -2.91 -0.02 3.76 16 9 C 0.09 4.60 1.95 -12.24 -0.02 4.58 16 10 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 11 C -0.13 -6.43 5.06 30.76 0.16 -6.28 16 12 C 0.06 2.47 7.03 72.12 0.51 2.98 16 13 O -0.33 -14.07 10.27 -91.87 -0.94 -15.01 16 14 C 0.13 5.72 6.47 22.51 0.15 5.87 16 15 C -0.22 -7.95 9.93 22.45 0.22 -7.72 16 16 C -0.05 -1.54 10.03 22.20 0.22 -1.32 16 17 C -0.24 -7.96 9.92 22.38 0.22 -7.74 16 18 C 0.24 9.64 6.33 38.25 0.24 9.88 16 19 N -0.86 -32.19 7.13 -51.29 -0.37 -32.55 16 20 C -0.23 -10.55 5.44 -19.62 -0.11 -10.65 16 21 H 0.26 13.83 8.31 -92.70 -0.77 13.06 16 22 H 0.03 1.67 8.10 -2.39 -0.02 1.65 16 23 H 0.08 4.14 6.51 -2.39 -0.02 4.12 16 24 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 25 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 27 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.41 16.99 6.24 -92.70 -0.58 16.41 16 30 H 0.39 11.89 8.89 -92.71 -0.82 11.06 16 Total: -1.00 -59.56 245.81 2.92 -56.64 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.23 Total: 32.90 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 2.19 Total: -35.76 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -0.12 Total: -82.87 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.94 Total: -15.01 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -59.56 2.92 -56.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260666102.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.883 kcal (2) G-P(sol) polarization free energy of solvation -59.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds