Wall clock time and date at job start Mon Mar 30 2020 02:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00373 * 2 1 4 4 H 1.48497 * 109.47177 * 89.99860 * 3 2 1 5 5 H 1.48494 * 109.47100 * 210.00103 * 3 2 1 6 6 H 1.48504 * 109.46752 * 330.00087 * 3 2 1 7 7 C 1.37876 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00272 * 359.97438 * 7 2 1 9 9 C 1.50711 * 120.00053 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.42922 * 300.08712 * 9 7 2 11 11 C 1.53073 * 109.43487 * 59.99470 * 9 7 2 12 12 C 1.53415 * 108.27824 * 168.20330 * 11 9 7 13 13 O 1.42819 * 108.36818 * 295.29991 * 12 11 9 14 14 C 1.35857 * 117.87272 * 49.16548 * 13 12 11 15 15 C 1.39218 * 118.46470 * 162.93571 * 14 13 12 16 16 C 1.38019 * 120.37366 * 179.83387 * 15 14 13 17 17 C 1.38163 * 120.03712 * 359.97438 * 16 15 14 18 18 C 1.38787 * 119.89858 * 0.07983 * 17 16 15 19 19 N 1.39668 * 119.92283 * 180.02562 * 18 17 16 20 20 C 1.38238 * 121.79283 * 342.88982 * 14 13 12 21 21 H 0.96999 * 119.99414 * 359.97438 * 1 2 3 22 22 H 1.08989 * 109.70368 * 287.90665 * 11 9 7 23 23 H 1.09008 * 109.70233 * 48.51451 * 11 9 7 24 24 H 1.08998 * 109.68263 * 55.02389 * 12 11 9 25 25 H 1.09004 * 109.68229 * 175.53915 * 12 11 9 26 26 H 1.07994 * 119.81564 * 359.81779 * 15 14 13 27 27 H 1.07995 * 119.97890 * 179.97438 * 16 15 14 28 28 H 1.08000 * 120.04472 * 180.10475 * 17 16 15 29 29 H 0.97001 * 119.99354 * 20.71310 * 19 18 17 30 30 H 0.96999 * 120.00439 * 200.71858 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 1.4000 5 1 3.5467 1.4401 -0.7000 6 1 1.4467 2.6527 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 1 3.8745 -0.6790 -0.8883 11 6 4.0204 -0.4720 1.2512 12 6 5.5252 -0.7403 1.3828 13 8 5.7150 -2.1372 1.6119 14 6 5.0759 -3.0084 0.7883 15 6 5.5133 -4.3296 0.7518 16 6 4.8904 -5.2486 -0.0681 17 6 3.8260 -4.8604 -0.8587 18 6 3.3853 -3.5447 -0.8283 19 7 2.3089 -3.1518 -1.6269 20 6 4.0131 -2.6158 -0.0037 21 1 -0.4849 0.8401 0.0004 22 1 3.8453 0.5993 1.1536 23 1 3.5013 -0.8511 2.1316 24 1 6.0322 -0.4466 0.4637 25 1 5.9275 -0.1721 2.2216 26 1 6.3449 -4.6370 1.3684 27 1 5.2353 -6.2717 -0.0916 28 1 3.3374 -5.5798 -1.4991 29 1 1.6866 -3.8157 -1.9628 30 1 2.1838 -2.2151 -1.8457 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260666119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:33 Heat of formation + Delta-G solvation = -6.032557 kcal Electronic energy + Delta-G solvation = -15081.611135 eV Core-core repulsion = 12649.026251 eV Total energy + Delta-G solvation = -2432.584884 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.98286 -37.15855 -34.92831 -32.74799 -31.71142 -29.90210 -27.54453 -26.55993 -23.27755 -22.57111 -20.89573 -19.13984 -17.19171 -17.09467 -16.39283 -15.17398 -14.82892 -14.58689 -14.25959 -14.10145 -13.27197 -12.92678 -12.63460 -12.44181 -11.90077 -11.69914 -11.34291 -11.03323 -10.68933 -10.35239 -10.18435 -10.07793 -9.57407 -9.23450 -8.96798 -8.62547 -7.42067 -6.60789 -6.17650 -4.17813 2.18443 2.36352 3.16821 3.26394 3.29311 3.97377 4.29011 4.56899 4.83899 5.17930 5.51794 5.60054 5.63860 5.74746 5.88197 5.90785 6.00469 6.19816 6.46676 6.57790 6.60797 6.69359 7.07722 7.13297 7.20422 7.28521 7.50359 7.60894 8.12936 8.42452 8.49906 8.79798 8.98870 9.42117 10.92019 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.031948 B = 0.013058 C = 0.009793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.200740 B = 2143.784436 C = 2858.408283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.266 1.266 6 H -0.295 1.295 7 C -0.516 4.516 8 H 0.097 0.903 9 C 0.056 3.944 10 H 0.033 0.967 11 C -0.160 4.160 12 C 0.059 3.941 13 O -0.323 6.323 14 C 0.157 3.843 15 C -0.219 4.219 16 C -0.059 4.059 17 C -0.244 4.244 18 C 0.263 3.737 19 N -0.859 5.859 20 C -0.191 4.191 21 H 0.265 0.735 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.382 0.618 30 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.278 -4.063 -1.120 9.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.129 4.129 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.223 1.223 7 C -0.554 4.554 8 H 0.115 0.885 9 C 0.037 3.963 10 H 0.050 0.950 11 C -0.197 4.197 12 C -0.016 4.016 13 O -0.237 6.237 14 C 0.111 3.889 15 C -0.240 4.240 16 C -0.078 4.078 17 C -0.267 4.267 18 C 0.156 3.844 19 N -0.401 5.401 20 C -0.196 4.196 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.128 0.872 29 H 0.209 0.791 30 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 8.237 -3.949 -0.968 9.186 hybrid contribution -0.124 1.281 -0.135 1.294 sum 8.113 -2.668 -1.103 8.612 Atomic orbital electron populations 1.69878 1.06146 1.27021 1.49979 1.25039 0.94681 0.98736 0.94486 0.86994 0.79969 0.84077 0.78217 1.20450 1.19133 1.22268 1.21271 0.88052 0.95331 1.50739 0.88501 1.18031 0.97218 0.88003 0.93005 0.94958 1.22687 0.93787 1.00727 1.02507 1.22960 0.98034 0.79435 1.01166 1.85877 1.67574 1.16645 1.53578 1.18510 0.90712 0.89373 0.90313 1.20112 1.05249 0.91604 1.07008 1.20381 0.94836 0.97811 0.94799 1.20459 1.02978 0.95544 1.07752 1.17394 0.87043 0.91613 0.88399 1.43191 1.28387 1.12582 1.55908 1.19621 0.99302 0.98739 1.01946 0.92521 0.92169 0.90435 0.92744 0.88881 0.86831 0.86742 0.87160 0.79113 0.74680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.96 55.43 0.77 -24.91 16 2 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 3 Si 0.88 20.64 24.27 -169.99 -4.13 16.51 16 4 H -0.28 -6.45 6.98 56.52 0.39 -6.05 16 5 H -0.27 -5.98 6.49 56.52 0.37 -5.61 16 6 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.52 -13.44 6.59 -34.44 -0.23 -13.67 16 8 H 0.10 2.72 6.20 -52.49 -0.33 2.40 16 9 C 0.06 1.30 1.54 -92.85 -0.14 1.16 16 10 H 0.03 0.77 7.19 -51.93 -0.37 0.39 16 11 C -0.16 -3.43 4.74 -26.48 -0.13 -3.56 16 12 C 0.06 1.08 7.03 37.37 0.26 1.34 16 13 O -0.32 -6.45 10.27 -19.29 -0.20 -6.65 16 14 C 0.16 3.25 6.47 -39.22 -0.25 2.99 16 15 C -0.22 -4.00 9.93 -39.30 -0.39 -4.39 16 16 C -0.06 -0.99 10.03 -39.69 -0.40 -1.39 16 17 C -0.24 -4.34 9.92 -39.41 -0.39 -4.73 16 18 C 0.26 5.36 6.33 -83.74 -0.53 4.83 16 19 N -0.86 -16.60 7.13 32.44 0.23 -16.37 16 20 C -0.19 -4.19 5.44 -104.25 -0.57 -4.76 16 21 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 22 H 0.06 1.29 3.74 -51.94 -0.19 1.10 16 23 H 0.08 1.76 8.10 -51.92 -0.42 1.34 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.38 6.34 8.89 -40.82 -0.36 5.98 16 30 H 0.42 8.79 6.24 -40.82 -0.25 8.53 16 LS Contribution 238.80 15.07 3.60 3.60 Total: -1.00 -28.67 238.80 -5.80 -34.47 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -3.22 Total: 13.64 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -2.86 Total: -20.29 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 1.00 Total: -41.28 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.20 Total: -6.65 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.13 Total: 16.51 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.67 -5.80 -34.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260666119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.440 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds