Wall clock time and date at job start Mon Mar 30 2020 02:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00373 * 2 1 4 4 H 1.48497 * 109.47177 * 89.99860 * 3 2 1 5 5 H 1.48494 * 109.47100 * 210.00103 * 3 2 1 6 6 H 1.48504 * 109.46752 * 330.00087 * 3 2 1 7 7 C 1.37876 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00272 * 359.97438 * 7 2 1 9 9 C 1.50711 * 120.00053 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.42922 * 300.08712 * 9 7 2 11 11 C 1.53073 * 109.43487 * 59.99470 * 9 7 2 12 12 C 1.53415 * 108.27824 * 168.20330 * 11 9 7 13 13 O 1.42819 * 108.36818 * 295.29991 * 12 11 9 14 14 C 1.35857 * 117.87272 * 49.16548 * 13 12 11 15 15 C 1.39218 * 118.46470 * 162.93571 * 14 13 12 16 16 C 1.38019 * 120.37366 * 179.83387 * 15 14 13 17 17 C 1.38163 * 120.03712 * 359.97438 * 16 15 14 18 18 C 1.38787 * 119.89858 * 0.07983 * 17 16 15 19 19 N 1.39668 * 119.92283 * 180.02562 * 18 17 16 20 20 C 1.38238 * 121.79283 * 342.88982 * 14 13 12 21 21 H 0.96999 * 119.99414 * 359.97438 * 1 2 3 22 22 H 1.08989 * 109.70368 * 287.90665 * 11 9 7 23 23 H 1.09008 * 109.70233 * 48.51451 * 11 9 7 24 24 H 1.08998 * 109.68263 * 55.02389 * 12 11 9 25 25 H 1.09004 * 109.68229 * 175.53915 * 12 11 9 26 26 H 1.07994 * 119.81564 * 359.81779 * 15 14 13 27 27 H 1.07995 * 119.97890 * 179.97438 * 16 15 14 28 28 H 1.08000 * 120.04472 * 180.10475 * 17 16 15 29 29 H 0.97001 * 119.99354 * 20.71310 * 19 18 17 30 30 H 0.96999 * 120.00439 * 200.71858 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 1.4000 5 1 3.5467 1.4401 -0.7000 6 1 1.4467 2.6527 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 1 3.8745 -0.6790 -0.8883 11 6 4.0204 -0.4720 1.2512 12 6 5.5252 -0.7403 1.3828 13 8 5.7150 -2.1372 1.6119 14 6 5.0759 -3.0084 0.7883 15 6 5.5133 -4.3296 0.7518 16 6 4.8904 -5.2486 -0.0681 17 6 3.8260 -4.8604 -0.8587 18 6 3.3853 -3.5447 -0.8283 19 7 2.3089 -3.1518 -1.6269 20 6 4.0131 -2.6158 -0.0037 21 1 -0.4849 0.8401 0.0004 22 1 3.8453 0.5993 1.1536 23 1 3.5013 -0.8511 2.1316 24 1 6.0322 -0.4466 0.4637 25 1 5.9275 -0.1721 2.2216 26 1 6.3449 -4.6370 1.3684 27 1 5.2353 -6.2717 -0.0916 28 1 3.3374 -5.5798 -1.4991 29 1 1.6866 -3.8157 -1.9628 30 1 2.1838 -2.2151 -1.8457 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260666119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:33 Heat of formation + Delta-G solvation = -25.540327 kcal Electronic energy + Delta-G solvation = -15082.457055 eV Core-core repulsion = 12649.026251 eV Total energy + Delta-G solvation = -2433.430804 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.50638 -38.63385 -36.61406 -34.39881 -33.59412 -31.38707 -29.06982 -28.30801 -24.84675 -24.30301 -22.42538 -20.73463 -19.03183 -18.66531 -17.98906 -16.76175 -16.39271 -16.27118 -15.76161 -15.68971 -14.91590 -14.81823 -14.11600 -14.01334 -13.48423 -13.35030 -13.00213 -12.69219 -12.30910 -12.11447 -11.82355 -11.73034 -11.26069 -10.99455 -10.78934 -10.48158 -8.94715 -8.29140 -8.08311 -6.27621 0.71556 0.89435 1.28781 1.34350 1.42832 2.32141 2.53063 3.00568 3.09960 3.47456 4.01740 4.05181 4.13107 4.36238 4.41592 4.43786 4.57864 4.77302 4.89303 4.91942 5.08507 5.13836 5.40210 5.59452 5.65873 5.72705 5.77479 6.06954 6.38932 6.63030 6.77951 6.99440 7.30141 7.36550 8.87272 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.031948 B = 0.013058 C = 0.009793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.200740 B = 2143.784436 C = 2858.408283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.021 3.979 3 Si 0.932 3.068 4 H -0.270 1.270 5 H -0.248 1.248 6 H -0.300 1.300 7 C -0.505 4.505 8 H 0.067 0.933 9 C 0.057 3.943 10 H 0.025 0.975 11 C -0.160 4.160 12 C 0.062 3.938 13 O -0.327 6.327 14 C 0.140 3.860 15 C -0.223 4.223 16 C -0.047 4.047 17 C -0.244 4.244 18 C 0.242 3.758 19 N -0.861 5.861 20 C -0.228 4.228 21 H 0.264 0.736 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.130 0.870 26 H 0.136 0.864 27 H 0.158 0.842 28 H 0.136 0.864 29 H 0.393 0.607 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.544 -4.878 -0.928 11.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.172 1.172 6 H -0.228 1.228 7 C -0.543 4.543 8 H 0.085 0.915 9 C 0.038 3.962 10 H 0.043 0.957 11 C -0.198 4.198 12 C -0.013 4.013 13 O -0.241 6.241 14 C 0.095 3.905 15 C -0.244 4.244 16 C -0.065 4.065 17 C -0.267 4.267 18 C 0.134 3.866 19 N -0.402 5.402 20 C -0.233 4.233 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.147 0.853 26 H 0.154 0.846 27 H 0.175 0.825 28 H 0.154 0.846 29 H 0.221 0.779 30 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 10.529 -4.795 -0.774 11.595 hybrid contribution -0.830 1.382 -0.209 1.625 sum 9.699 -3.413 -0.983 10.329 Atomic orbital electron populations 1.70013 1.07816 1.27694 1.52467 1.25725 0.95251 1.02096 0.94635 0.86097 0.79384 0.79932 0.78623 1.19632 1.17237 1.22762 1.21392 0.89874 0.94088 1.48932 0.91491 1.17908 0.95064 0.89708 0.93484 0.95684 1.22576 0.96345 1.00257 1.00599 1.23112 0.95535 0.79161 1.03487 1.85867 1.67425 1.17224 1.53627 1.18826 0.90796 0.90593 0.90312 1.20501 1.05816 0.90753 1.07320 1.20884 0.93381 0.99472 0.92799 1.20812 1.03167 0.94742 1.07942 1.17725 0.87412 0.92787 0.88644 1.43057 1.28857 1.12189 1.56095 1.19688 1.01161 0.98387 1.04112 0.92707 0.92068 0.92427 0.91520 0.85265 0.84577 0.82471 0.84637 0.77860 0.76038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.82 13.96 21.45 0.30 -55.52 16 2 C 0.02 1.15 5.45 84.65 0.46 1.61 16 3 Si 0.93 42.68 24.27 68.60 1.67 44.34 16 4 H -0.27 -11.95 6.98 99.48 0.69 -11.26 16 5 H -0.25 -10.53 6.49 99.48 0.65 -9.89 16 6 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 7 C -0.50 -26.95 6.59 25.60 0.17 -26.78 16 8 H 0.07 3.92 6.20 -2.91 -0.02 3.90 16 9 C 0.06 2.65 1.54 -12.24 -0.02 2.63 16 10 H 0.03 1.19 7.19 -2.39 -0.02 1.17 16 11 C -0.16 -6.74 4.74 30.76 0.15 -6.59 16 12 C 0.06 2.11 7.03 72.12 0.51 2.61 16 13 O -0.33 -12.37 10.27 -91.94 -0.94 -13.31 16 14 C 0.14 5.58 6.47 22.51 0.15 5.73 16 15 C -0.22 -7.46 9.93 22.45 0.22 -7.24 16 16 C -0.05 -1.39 10.03 22.20 0.22 -1.16 16 17 C -0.24 -8.04 9.92 22.38 0.22 -7.82 16 18 C 0.24 9.71 6.33 38.25 0.24 9.95 16 19 N -0.86 -33.74 7.13 -51.29 -0.37 -34.11 16 20 C -0.23 -9.91 5.44 -19.62 -0.11 -10.02 16 21 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 22 H 0.06 2.52 3.74 -2.39 -0.01 2.52 16 23 H 0.06 2.61 8.10 -2.38 -0.02 2.59 16 24 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 26 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 27 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 28 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 29 H 0.39 13.17 8.89 -92.71 -0.82 12.34 16 30 H 0.41 17.69 6.24 -92.71 -0.58 17.11 16 Total: -1.00 -62.48 238.80 2.57 -59.91 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -0.30 Total: 35.79 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 2.21 Total: -37.10 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -0.07 Total: -89.63 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.94 Total: -13.31 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.67 Total: 44.34 kcal Total: -62.48 2.57 -59.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260666119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.367 kcal (2) G-P(sol) polarization free energy of solvation -62.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds