Wall clock time and date at job start Mon Mar 30 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00154 * 2 1 4 4 H 1.48499 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46965 * 299.99816 * 3 2 1 6 6 H 1.48499 * 109.47282 * 59.99687 * 3 2 1 7 7 C 1.37879 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99986 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.73067 * 299.40706 * 9 7 2 11 11 C 1.53407 * 109.70481 * 59.99755 * 9 7 2 12 12 O 1.42831 * 108.40577 * 184.38631 * 11 9 7 13 13 C 1.35851 * 117.87301 * 310.79832 * 12 11 9 14 14 C 1.39224 * 118.47052 * 197.19039 * 13 12 11 15 15 C 1.38014 * 120.37600 * 180.21063 * 14 13 12 16 16 C 1.38152 * 120.03957 * 359.96779 * 15 14 13 17 17 C 1.38798 * 119.89698 * 359.95441 * 16 15 14 18 18 N 1.39670 * 119.91871 * 179.97438 * 17 16 15 19 19 C 1.38234 * 121.79120 * 17.25239 * 13 12 11 20 20 C 1.50758 * 121.44893 * 359.47919 * 19 13 12 21 21 H 0.96998 * 119.99981 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.68467 * 64.64413 * 11 9 7 23 23 H 1.08999 * 109.68325 * 304.12547 * 11 9 7 24 24 H 1.08003 * 119.80915 * 0.18165 * 14 13 12 25 25 H 1.08003 * 119.97755 * 180.02562 * 15 14 13 26 26 H 1.08000 * 120.05202 * 179.97438 * 16 15 14 27 27 H 0.96997 * 119.99645 * 359.97438 * 18 17 16 28 28 H 0.97002 * 119.99998 * 180.02562 * 18 17 16 29 29 H 1.08998 * 109.43543 * 137.89581 * 20 19 13 30 30 H 1.09002 * 109.43192 * 257.81541 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6303 -2.5657 0.8941 11 6 0.3674 -2.5863 -1.2505 12 8 -0.4091 -3.7825 -1.1718 13 6 0.2374 -4.9413 -0.8807 14 6 -0.4058 -6.1461 -1.1509 15 6 0.2129 -7.3467 -0.8667 16 6 1.4778 -7.3584 -0.3115 17 6 2.1257 -6.1611 -0.0409 18 7 3.4044 -6.1724 0.5209 19 6 1.5042 -4.9494 -0.3274 20 6 2.2401 -3.6680 -0.0286 21 1 -0.4850 0.8400 -0.0004 22 1 0.9944 -2.6135 -2.1417 23 1 -0.2944 -1.7212 -1.2936 24 1 -1.3948 -6.1412 -1.5850 25 1 -0.2919 -8.2775 -1.0794 26 1 1.9620 -8.2977 -0.0886 27 1 3.8384 -7.0163 0.7218 28 1 3.8581 -5.3363 0.7108 29 1 2.7329 -3.7503 0.9402 30 1 2.9874 -3.4902 -0.8019 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260696637.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:36 Heat of formation + Delta-G solvation = -27.186346 kcal Electronic energy + Delta-G solvation = -14652.438202 eV Core-core repulsion = 12218.936021 eV Total energy + Delta-G solvation = -2433.502181 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.84437 -37.13530 -34.63324 -33.35605 -31.64952 -29.53652 -27.86382 -25.16122 -24.59876 -22.26731 -21.16917 -18.92753 -17.19878 -16.94127 -16.34278 -15.06039 -14.95874 -14.50003 -14.30343 -13.91646 -13.17773 -12.93036 -12.50958 -12.43370 -12.08168 -11.32198 -11.19916 -11.05334 -10.80552 -10.45045 -10.28541 -10.10173 -9.46733 -9.35818 -8.90606 -8.48760 -7.47278 -7.02671 -6.15577 -4.22682 2.01010 2.18929 3.22351 3.30895 3.34160 4.19426 4.29581 4.36112 4.53132 5.15988 5.39993 5.56696 5.72655 5.97339 6.11847 6.24117 6.30248 6.37261 6.56992 6.71729 6.82684 6.88761 7.02171 7.12895 7.32161 7.48431 7.68539 7.79461 7.86147 8.10250 8.18970 8.52460 8.81520 9.43340 10.91609 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.046791 B = 0.008317 C = 0.007204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.268381 B = 3365.601622 C = 3886.062221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.019 3.981 10 H 0.039 0.961 11 C 0.061 3.939 12 O -0.326 6.326 13 C 0.188 3.812 14 C -0.219 4.219 15 C -0.052 4.052 16 C -0.247 4.247 17 C 0.241 3.759 18 N -0.878 5.878 19 C -0.230 4.230 20 C -0.061 4.061 21 H 0.265 0.735 22 H 0.036 0.964 23 H 0.135 0.865 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.111 0.889 27 H 0.392 0.608 28 H 0.399 0.601 29 H 0.057 0.943 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 -10.271 -0.876 10.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.000 4.000 10 H 0.057 0.943 11 C -0.013 4.013 12 O -0.239 6.239 13 C 0.141 3.859 14 C -0.239 4.239 15 C -0.071 4.071 16 C -0.270 4.270 17 C 0.137 3.863 18 N -0.418 5.418 19 C -0.235 4.235 20 C -0.098 4.098 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.152 0.848 24 H 0.137 0.863 25 H 0.135 0.865 26 H 0.129 0.871 27 H 0.219 0.781 28 H 0.228 0.772 29 H 0.075 0.925 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.967 -10.075 -0.934 10.544 hybrid contribution 1.023 0.966 0.241 1.428 sum 3.990 -9.109 -0.693 9.968 Atomic orbital electron populations 1.69826 1.05935 1.26960 1.50107 1.25051 0.94968 0.99476 0.94646 0.86440 0.80033 0.83275 0.77742 1.19708 1.20831 1.20862 1.21102 0.93095 0.89847 1.51330 0.92063 1.19272 0.93480 0.92504 0.94754 0.94279 1.23590 0.96294 0.82998 0.98438 1.85978 1.38472 1.15249 1.84193 1.18631 0.89896 0.86753 0.90649 1.20320 1.02180 0.90129 1.11299 1.20442 0.93885 0.96636 0.96116 1.20248 0.97933 0.95514 1.13300 1.17476 0.85096 0.92867 0.90883 1.42519 1.16747 1.10508 1.72060 1.19620 0.97321 0.94980 1.11592 1.20423 0.98258 0.91403 0.99760 0.92535 0.94521 0.84789 0.86322 0.86456 0.87109 0.78071 0.77195 0.92475 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.82 11.32 55.43 0.63 -24.20 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -13.76 8.55 -34.44 -0.29 -14.06 16 8 H 0.06 1.59 7.75 -52.49 -0.41 1.19 16 9 C 0.02 0.47 2.34 -91.48 -0.21 0.25 16 10 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 11 C 0.06 1.50 6.14 37.37 0.23 1.73 16 12 O -0.33 -7.72 10.27 -19.27 -0.20 -7.92 16 13 C 0.19 4.04 6.47 -39.22 -0.25 3.78 16 14 C -0.22 -4.00 9.93 -39.30 -0.39 -4.39 16 15 C -0.05 -0.81 10.03 -39.70 -0.40 -1.21 16 16 C -0.25 -3.85 9.89 -39.41 -0.39 -4.24 16 17 C 0.24 4.16 6.73 -83.74 -0.56 3.60 16 18 N -0.88 -11.99 8.98 32.44 0.29 -11.70 16 19 C -0.23 -4.70 5.77 -104.25 -0.60 -5.30 16 20 C -0.06 -1.31 4.35 -27.78 -0.12 -1.43 16 21 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.13 3.59 6.02 -51.93 -0.31 3.27 16 24 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 25 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 26 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.39 4.14 8.84 -40.82 -0.36 3.78 16 28 H 0.40 5.35 6.97 -40.82 -0.28 5.07 16 29 H 0.06 1.15 7.10 -51.93 -0.37 0.78 16 30 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 LS Contribution 250.44 15.07 3.77 3.77 Total: -1.00 -28.78 250.44 -7.02 -35.80 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.40 Total: 8.37 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -3.09 Total: -19.73 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.92 Total: -35.90 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.20 Total: -7.92 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.78 -7.02 -35.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260696637.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.612 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds