Wall clock time and date at job start Mon Mar 30 2020 02:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99749 * 2 1 4 4 H 1.48494 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47443 * 300.00572 * 3 2 1 6 6 H 1.48504 * 109.47080 * 60.00350 * 3 2 1 7 7 C 1.37878 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99548 * 185.70054 * 7 2 1 9 9 C 1.50700 * 120.00172 * 5.69885 * 7 2 1 10 10 H 1.08998 * 109.43410 * 334.97974 * 9 7 2 11 11 C 1.53063 * 109.43531 * 94.84280 * 9 7 2 12 12 C 1.53403 * 108.29137 * 168.31625 * 11 9 7 13 13 O 1.42823 * 108.37406 * 295.25213 * 12 11 9 14 14 C 1.35855 * 117.86606 * 49.20047 * 13 12 11 15 15 C 1.39020 * 118.43616 * 162.81246 * 14 13 12 16 16 C 1.38632 * 120.16675 * 179.81494 * 15 14 13 17 17 N 1.39670 * 120.10223 * 179.97438 * 16 15 14 18 18 C 1.38981 * 119.79407 * 359.97438 * 16 15 14 19 19 C 1.37952 * 119.90640 * 0.07657 * 18 16 15 20 20 C 1.38451 * 121.80045 * 342.76460 * 14 13 12 21 21 H 0.97000 * 120.00420 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.70391 * 48.61627 * 11 9 7 23 23 H 1.08996 * 109.70270 * 288.01457 * 11 9 7 24 24 H 1.09001 * 109.68377 * 175.53529 * 12 11 9 25 25 H 1.08997 * 109.68797 * 54.97935 * 12 11 9 26 26 H 1.08002 * 119.91455 * 359.79139 * 15 14 13 27 27 H 0.97002 * 119.99722 * 0.02562 * 17 16 15 28 28 H 0.96992 * 119.99966 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.04419 * 180.02562 * 18 16 15 30 30 H 1.07997 * 119.79067 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0805 -1.1963 0.0924 9 6 1.2567 -2.4959 -0.1307 10 1 0.2347 -2.3641 0.2245 11 6 1.2329 -2.9249 -1.5998 12 6 0.7344 -4.3740 -1.6702 13 8 1.6894 -5.2109 -1.0165 14 6 2.1171 -4.8415 0.2190 15 6 2.7458 -5.7931 1.0138 16 6 3.1999 -5.4541 2.2790 17 7 3.8309 -6.4114 3.0766 18 6 3.0251 -4.1587 2.7513 19 6 2.3999 -3.2169 1.9607 20 6 1.9430 -3.5537 0.6965 21 1 -0.4851 0.8400 0.0004 22 1 2.2377 -2.8613 -2.0175 23 1 0.5595 -2.2771 -2.1609 24 1 0.6330 -4.6771 -2.7123 25 1 -0.2297 -4.4554 -1.1683 26 1 2.8806 -6.7992 0.6447 27 1 3.9524 -7.3149 2.7453 28 1 4.1483 -6.1725 3.9614 29 1 3.3776 -3.8901 3.7362 30 1 2.2655 -2.2107 2.3294 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260707578.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:47 Heat of formation + Delta-G solvation = -45.235808 kcal Electronic energy + Delta-G solvation = -14643.232278 eV Core-core repulsion = 12208.947414 eV Total energy + Delta-G solvation = -2434.284864 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.32662 -38.69654 -36.34711 -34.58241 -33.31974 -30.97857 -29.71924 -27.71162 -25.03041 -23.83508 -23.06858 -20.60304 -18.73921 -18.44570 -17.84910 -17.04483 -16.47033 -16.23469 -15.81144 -15.31081 -14.64901 -14.32938 -14.22894 -13.99283 -13.73873 -13.07184 -12.92884 -12.75007 -12.36734 -12.28614 -12.01033 -11.54421 -11.22533 -10.79721 -10.74189 -10.48496 -9.14633 -8.28209 -8.00297 -6.22118 0.69773 0.87203 1.38676 1.41425 1.53147 2.41538 2.48608 3.09996 3.15565 3.26301 4.16585 4.24088 4.28267 4.40720 4.42431 4.59958 4.60525 4.86948 5.02390 5.10667 5.21387 5.37154 5.53049 5.63130 5.69896 5.79166 5.93616 6.12295 6.38719 6.60919 6.77280 6.91749 7.17182 7.43027 8.94540 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.031175 B = 0.009931 C = 0.008001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.941143 B = 2818.824386 C = 3498.797782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.509 4.509 8 H 0.046 0.954 9 C 0.071 3.929 10 H 0.031 0.969 11 C -0.137 4.137 12 C 0.065 3.935 13 O -0.330 6.330 14 C 0.142 3.858 15 C -0.242 4.242 16 C 0.235 3.765 17 N -0.862 5.862 18 C -0.234 4.234 19 C -0.041 4.041 20 C -0.202 4.202 21 H 0.263 0.737 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.128 0.872 25 H 0.055 0.945 26 H 0.138 0.862 27 H 0.406 0.594 28 H 0.408 0.592 29 H 0.137 0.863 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 -10.431 3.106 11.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.183 4.183 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.052 3.948 10 H 0.049 0.951 11 C -0.176 4.176 12 C -0.010 4.010 13 O -0.244 6.244 14 C 0.096 3.904 15 C -0.265 4.265 16 C 0.129 3.871 17 N -0.404 5.404 18 C -0.257 4.257 19 C -0.060 4.060 20 C -0.205 4.205 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.146 0.854 25 H 0.074 0.926 26 H 0.156 0.844 27 H 0.236 0.764 28 H 0.238 0.762 29 H 0.155 0.845 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.783 -10.451 2.976 11.873 hybrid contribution 0.146 1.293 0.092 1.304 sum 4.930 -9.158 3.068 10.844 Atomic orbital electron populations 1.70040 1.07237 1.27387 1.51839 1.25713 0.95599 1.02319 0.94634 0.85594 0.79069 0.79810 0.77765 1.19341 1.20416 1.20482 1.21233 0.92863 0.91124 1.49497 0.93597 1.17707 0.95663 0.91045 0.90344 0.95065 1.22205 1.00231 0.95247 0.99891 1.23114 0.89889 0.89908 0.98094 1.85812 1.58945 1.51268 1.28378 1.18706 0.95098 0.91950 0.84603 1.19907 1.12445 0.99601 0.94593 1.17273 0.90849 0.89314 0.89636 1.42208 1.66940 1.11859 1.19377 1.20645 1.10261 0.92618 1.02163 1.20768 0.93973 0.98567 0.92662 1.20370 1.07855 0.93996 0.98260 0.92809 0.93129 0.92268 0.85377 0.92628 0.84448 0.76398 0.76212 0.84509 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.13 12.77 21.45 0.27 -53.86 16 2 C 0.02 0.88 5.45 84.65 0.46 1.34 16 3 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.51 -28.49 7.00 25.60 0.18 -28.31 16 8 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 9 C 0.07 3.70 2.45 -12.23 -0.03 3.67 16 10 H 0.03 1.84 7.23 -2.39 -0.02 1.82 16 11 C -0.14 -6.29 5.49 30.75 0.17 -6.12 16 12 C 0.06 2.42 7.03 72.12 0.51 2.93 16 13 O -0.33 -13.26 10.27 -91.92 -0.94 -14.20 16 14 C 0.14 5.99 6.47 22.51 0.15 6.14 16 15 C -0.24 -8.49 9.78 22.55 0.22 -8.27 16 16 C 0.23 7.36 6.75 38.16 0.26 7.62 16 17 N -0.86 -17.75 9.09 -51.50 -0.47 -18.22 16 18 C -0.23 -8.22 9.90 22.38 0.22 -8.00 16 19 C -0.04 -1.79 9.09 22.28 0.20 -1.59 16 20 C -0.20 -9.53 5.43 -19.70 -0.11 -9.63 16 21 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 22 H 0.05 2.34 8.10 -2.39 -0.02 2.32 16 23 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 24 H 0.13 3.78 8.14 -2.39 -0.02 3.76 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 27 H 0.41 6.51 8.84 -92.71 -0.82 5.69 16 28 H 0.41 6.51 8.84 -92.71 -0.82 5.69 16 29 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 30 H 0.11 5.09 7.35 -2.91 -0.02 5.07 16 Total: -1.00 -64.85 254.85 2.64 -62.21 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.48 Total: 18.29 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 2.23 Total: -40.23 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -0.19 Total: -72.08 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.94 Total: -14.20 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -64.85 2.64 -62.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260707578.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.976 kcal (2) G-P(sol) polarization free energy of solvation -64.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds