Wall clock time and date at job start Mon Mar 30 2020 03:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.87313 * 2 1 4 4 C 1.54420 * 110.81073 * 123.48733 * 2 1 3 5 5 C 1.51057 * 105.15186 * 92.08972 * 4 2 1 6 6 C 1.38629 * 131.51618 * 197.06320 * 5 4 2 7 7 C 1.38211 * 119.09227 * 179.97438 * 6 5 4 8 8 N 1.31886 * 120.71415 * 359.97438 * 7 6 5 9 9 C 1.31841 * 121.78503 * 0.04731 * 8 7 6 10 10 C 1.38327 * 120.75661 * 359.92601 * 9 8 7 11 11 C 1.51188 * 131.26922 * 180.02562 * 10 9 8 12 12 O 1.42903 * 110.29493 * 281.97532 * 11 10 9 13 13 C 1.50694 * 110.30149 * 44.01885 * 11 10 9 14 14 H 1.08009 * 119.99913 * 2.69387 * 13 11 10 15 15 C 1.37884 * 120.00431 * 182.70150 * 13 11 10 16 16 N 1.31513 * 119.99999 * 172.16502 * 15 13 11 17 17 Si 1.86800 * 119.99454 * 352.16123 * 15 13 11 18 18 H 1.48494 * 109.46990 * 274.90616 * 17 15 13 19 19 H 1.48501 * 109.47520 * 34.90827 * 17 15 13 20 20 H 1.48499 * 109.46934 * 154.90782 * 17 15 13 21 21 H 1.08995 * 109.47372 * 176.91176 * 1 2 3 22 22 H 1.09000 * 109.47209 * 296.91649 * 1 2 3 23 23 H 1.09005 * 109.46872 * 56.91313 * 1 2 3 24 24 H 1.09002 * 110.30349 * 333.17900 * 4 2 1 25 25 H 1.08990 * 110.39272 * 211.06153 * 4 2 1 26 26 H 1.07989 * 120.45216 * 359.96250 * 6 5 4 27 27 H 1.08000 * 119.64116 * 180.02562 * 7 6 5 28 28 H 1.08003 * 119.61714 * 179.97438 * 9 8 7 29 29 H 0.96698 * 113.99774 * 62.76253 * 12 11 10 30 30 H 0.96998 * 119.99802 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0184 0.0000 4 6 2.0786 -0.7964 1.2039 5 6 2.2686 -2.2049 0.6920 6 6 2.4311 -3.4102 1.3572 7 6 2.5869 -4.5689 0.6200 8 7 2.5813 -4.5344 -0.6984 9 6 2.4295 -3.4059 -1.3629 10 6 2.2677 -2.2066 -0.6928 11 6 2.0775 -0.7965 -1.2038 12 8 3.3270 -0.2520 -1.6330 13 6 1.0843 -0.7806 -2.3370 14 1 0.5933 -1.6944 -2.6376 15 6 0.8025 0.4005 -2.9904 16 7 0.0572 0.3910 -4.0739 17 14 1.4794 2.0140 -2.3363 18 1 0.5698 2.5441 -1.2891 19 1 2.8260 1.7859 -1.7532 20 1 1.5806 2.9947 -3.4468 21 1 -0.3634 -1.0261 -0.0554 22 1 -0.3634 0.4652 0.9163 23 1 -0.3633 0.5610 -0.8611 24 1 1.3602 -0.7856 2.0236 25 1 3.0316 -0.3812 1.5315 26 1 2.4361 -3.4433 2.4365 27 1 2.7137 -5.5129 1.1291 28 1 2.4308 -3.4181 -2.4429 29 1 3.7291 -0.7264 -2.3735 30 1 -0.1413 1.2219 -4.5332 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260725140.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:24 Heat of formation + Delta-G solvation = -28.507362 kcal Electronic energy + Delta-G solvation = -15242.059412 eV Core-core repulsion = 12808.499947 eV Total energy + Delta-G solvation = -2433.559465 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.79784 -38.88683 -35.81932 -34.54370 -32.64185 -31.85073 -29.31571 -27.45627 -25.60543 -23.58798 -22.46192 -21.06202 -19.00840 -17.91829 -17.09185 -16.86565 -16.67917 -15.73955 -15.29297 -15.00629 -14.88683 -14.49269 -14.04538 -13.78956 -13.42327 -13.32098 -12.85942 -12.49127 -12.37225 -12.10716 -12.03779 -11.56794 -10.94558 -10.81937 -10.40936 -10.23155 -10.14182 -9.81566 -8.33196 -6.42234 0.28824 0.40518 1.37705 1.45210 1.67282 2.41903 2.90878 3.05504 3.39996 3.56197 3.74996 3.83823 4.20737 4.25053 4.28042 4.47773 4.61368 4.64646 4.85710 4.94208 4.94332 5.05649 5.08896 5.30480 5.40124 5.44706 5.66335 5.67915 5.87430 6.12295 6.63742 7.07959 7.11367 7.34707 8.80921 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.038765 B = 0.012335 C = 0.010996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.124368 B = 2269.356432 C = 2545.787512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.069 4.069 5 C -0.060 4.060 6 C -0.158 4.158 7 C 0.082 3.918 8 N -0.511 5.511 9 C 0.100 3.900 10 C -0.159 4.159 11 C 0.259 3.741 12 O -0.573 6.573 13 C -0.535 4.535 14 H 0.033 0.967 15 C 0.045 3.955 16 N -0.936 5.936 17 Si 0.920 3.080 18 H -0.266 1.266 19 H -0.211 1.211 20 H -0.312 1.312 21 H 0.041 0.959 22 H 0.071 0.929 23 H 0.039 0.961 24 H 0.105 0.895 25 H 0.096 0.904 26 H 0.170 0.830 27 H 0.191 0.809 28 H 0.137 0.863 29 H 0.371 0.629 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.024 -2.955 13.037 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.106 4.106 5 C -0.068 4.068 6 C -0.178 4.178 7 C -0.075 4.075 8 N -0.221 5.221 9 C -0.055 4.055 10 C -0.161 4.161 11 C 0.219 3.781 12 O -0.380 6.380 13 C -0.572 4.572 14 H 0.051 0.949 15 C -0.155 4.155 16 N -0.575 5.575 17 Si 0.745 3.255 18 H -0.192 1.192 19 H -0.133 1.133 20 H -0.241 1.241 21 H 0.060 0.940 22 H 0.090 0.910 23 H 0.059 0.941 24 H 0.123 0.877 25 H 0.115 0.885 26 H 0.187 0.813 27 H 0.207 0.793 28 H 0.155 0.845 29 H 0.219 0.781 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.933 -3.234 12.926 14.209 hybrid contribution -0.208 1.050 -0.834 1.357 sum 4.725 -2.184 12.093 13.165 Atomic orbital electron populations 1.21587 0.93737 1.01213 1.00740 1.21971 0.96397 0.98753 0.93982 0.90837 1.21143 1.02637 0.89049 0.97735 1.21254 0.94674 0.96885 0.94020 1.21945 1.01945 0.91068 1.02806 1.23292 0.95478 0.99591 0.89123 1.67708 1.14179 1.28904 1.11295 1.22147 0.95916 0.87332 1.00137 1.22270 0.99798 0.97693 0.96331 1.18524 0.82322 0.85233 0.92028 1.86516 1.37847 1.58826 1.54795 1.21345 1.24803 0.94862 1.16193 0.94857 1.25604 0.93721 1.02543 0.93659 1.70081 1.39807 1.28622 1.18974 0.86439 0.82763 0.78484 0.77793 1.19204 1.13337 1.24096 0.93982 0.90992 0.94145 0.87692 0.88538 0.81295 0.79267 0.84527 0.78117 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 7.89 71.98 0.57 -3.99 16 2 C -0.09 -3.60 2.14 -9.84 -0.02 -3.62 16 3 H 0.07 2.90 5.68 -2.39 -0.01 2.88 16 4 C -0.07 -2.09 6.31 30.44 0.19 -1.90 16 5 C -0.06 -2.01 6.21 -19.60 -0.12 -2.13 16 6 C -0.16 -4.23 10.12 22.36 0.23 -4.00 16 7 C 0.08 2.32 11.19 84.68 0.95 3.26 16 8 N -0.51 -18.54 10.36 -195.75 -2.03 -20.57 16 9 C 0.10 4.05 10.85 84.71 0.92 4.97 16 10 C -0.16 -6.45 5.26 -19.63 -0.10 -6.55 16 11 C 0.26 11.53 0.65 -11.67 -0.01 11.52 16 12 O -0.57 -24.99 9.97 -148.98 -1.48 -26.47 16 13 C -0.53 -28.88 7.23 25.60 0.19 -28.69 16 14 H 0.03 2.04 7.86 -2.91 -0.02 2.02 16 15 C 0.04 2.50 4.65 84.66 0.39 2.89 16 16 N -0.94 -56.93 13.96 21.45 0.30 -56.63 16 17 Si 0.92 43.58 22.86 68.60 1.57 45.15 16 18 H -0.27 -11.92 6.94 99.48 0.69 -11.23 16 19 H -0.21 -9.52 5.22 99.48 0.52 -9.00 16 20 H -0.31 -15.27 7.11 99.48 0.71 -14.57 16 21 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 22 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.04 1.83 5.02 -2.38 -0.01 1.82 16 24 H 0.10 2.54 7.91 -2.39 -0.02 2.52 16 25 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.17 3.00 8.06 -2.92 -0.02 2.97 16 27 H 0.19 3.65 8.06 -2.91 -0.02 3.62 16 28 H 0.14 5.74 8.06 -2.91 -0.02 5.72 16 29 H 0.37 14.76 9.07 -74.06 -0.67 14.09 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -66.66 241.26 1.81 -64.85 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.28 Total: 21.92 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 3.18 Total: -28.24 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -1.73 Total: -77.20 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -1.48 Total: -26.47 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.57 Total: 45.15 kcal Total: -66.66 1.81 -64.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260725140.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.340 kcal (2) G-P(sol) polarization free energy of solvation -66.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds