Wall clock time and date at job start Mon Mar 30 2020 03:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.87124 * 2 1 4 4 C 1.54569 * 110.89354 * 236.48657 * 2 1 3 5 5 C 1.51056 * 105.19494 * 215.72906 * 4 2 1 6 6 C 1.38619 * 131.52047 * 197.02951 * 5 4 2 7 7 C 1.38211 * 119.10073 * 179.97438 * 6 5 4 8 8 N 1.31888 * 120.70657 * 359.96335 * 7 6 5 9 9 C 1.31829 * 121.78640 * 0.02562 * 8 7 6 10 10 C 1.38331 * 120.75760 * 0.02562 * 9 8 7 11 11 C 1.51194 * 131.26668 * 180.02562 * 10 9 8 12 12 O 1.42897 * 110.29682 * 281.92668 * 11 10 9 13 13 C 1.50701 * 110.29604 * 43.96756 * 11 10 9 14 14 H 1.08006 * 119.99635 * 232.70510 * 13 11 10 15 15 C 1.37874 * 119.99904 * 52.70713 * 13 11 10 16 16 N 1.31506 * 120.00416 * 0.33147 * 15 13 11 17 17 Si 1.86799 * 119.99615 * 180.32740 * 15 13 11 18 18 H 1.48501 * 109.47083 * 180.02562 * 17 15 13 19 19 H 1.48506 * 109.47200 * 299.99716 * 17 15 13 20 20 H 1.48493 * 109.47361 * 60.00063 * 17 15 13 21 21 H 1.09002 * 109.47143 * 296.51344 * 1 2 3 22 22 H 1.08997 * 109.47172 * 56.51202 * 1 2 3 23 23 H 1.08997 * 109.47163 * 176.51250 * 1 2 3 24 24 H 1.09002 * 110.33634 * 96.76881 * 4 2 1 25 25 H 1.08994 * 110.31071 * 334.67930 * 4 2 1 26 26 H 1.08009 * 120.45090 * 359.94129 * 6 5 4 27 27 H 1.08000 * 119.64406 * 179.97438 * 7 6 5 28 28 H 1.08005 * 119.61723 * 180.02562 * 9 8 7 29 29 H 0.96708 * 114.00022 * 58.11926 * 12 11 10 30 30 H 0.97007 * 120.00208 * 5.26391 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0184 0.0000 4 6 2.0812 -0.7973 -1.2040 5 6 3.3280 -1.4783 -0.6905 6 6 4.3965 -2.0607 -1.3542 7 6 5.4220 -2.6205 -0.6158 8 7 5.3900 -2.6030 0.7025 9 6 4.3898 -2.0575 1.3657 10 6 3.3277 -1.4789 0.6942 11 6 2.0782 -0.7970 1.2036 12 8 1.1227 -1.7692 1.6325 13 6 2.4173 0.1368 2.3367 14 1 1.8888 0.0609 3.2756 15 6 3.4021 1.0881 2.1749 16 7 4.0410 1.1848 1.0295 17 14 3.8287 2.2396 3.5825 18 1 4.9114 3.1623 3.1564 19 1 2.6274 3.0273 3.9591 20 1 4.2859 1.4451 4.7508 21 1 -0.3633 0.4588 0.9196 22 1 -0.3633 0.5670 -0.8570 23 1 -0.3633 -1.0257 -0.0625 24 1 2.3289 -0.1228 -2.0236 25 1 1.3529 -1.5389 -1.5320 26 1 4.4270 -2.0774 -2.4337 27 1 6.2586 -3.0771 -1.1239 28 1 4.3996 -2.0623 2.4457 29 1 1.4471 -2.3604 2.3257 30 1 3.7687 0.6399 0.2746 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260725148.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:34 Heat of formation + Delta-G solvation = -39.402034 kcal Electronic energy + Delta-G solvation = -15370.432586 eV Core-core repulsion = 12936.400693 eV Total energy + Delta-G solvation = -2434.031893 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.86249 -38.84205 -35.72839 -34.60918 -32.55287 -31.83077 -28.55254 -27.56835 -25.65130 -23.29786 -22.53957 -20.89680 -19.75849 -17.85720 -17.20816 -16.93793 -15.75753 -15.71583 -15.47708 -15.11232 -14.80161 -14.51316 -13.81183 -13.65635 -13.24860 -13.18044 -12.74560 -12.55994 -12.18686 -11.99791 -11.92231 -11.85785 -11.51280 -10.58605 -10.33270 -10.29960 -10.10815 -9.72152 -8.46434 -6.36457 0.33295 0.43472 1.52143 1.57153 1.76375 2.54606 2.94128 3.16545 3.46327 3.61271 3.81344 3.86193 4.13211 4.28246 4.34642 4.41870 4.62150 4.68539 4.76333 4.91802 4.92925 5.02966 5.14775 5.32746 5.35895 5.57518 5.64584 5.88655 6.01548 6.15772 6.63960 6.98997 7.12321 7.49830 8.83658 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.024244 B = 0.015618 C = 0.011772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.642694 B = 1792.404995 C = 2377.975003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.087 4.087 3 H 0.061 0.939 4 C -0.074 4.074 5 C -0.075 4.075 6 C -0.165 4.165 7 C 0.074 3.926 8 N -0.509 5.509 9 C 0.103 3.897 10 C -0.143 4.143 11 C 0.272 3.728 12 O -0.565 6.565 13 C -0.632 4.632 14 H 0.047 0.953 15 C -0.007 4.007 16 N -0.929 5.929 17 Si 1.100 2.900 18 H -0.288 1.288 19 H -0.273 1.273 20 H -0.275 1.275 21 H 0.040 0.960 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.162 0.838 27 H 0.187 0.813 28 H 0.135 0.865 29 H 0.371 0.629 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 -4.437 -4.570 6.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.106 4.106 3 H 0.079 0.921 4 C -0.110 4.110 5 C -0.084 4.084 6 C -0.185 4.185 7 C -0.083 4.083 8 N -0.218 5.218 9 C -0.053 4.053 10 C -0.146 4.146 11 C 0.231 3.769 12 O -0.371 6.371 13 C -0.670 4.670 14 H 0.066 0.934 15 C -0.209 4.209 16 N -0.567 5.567 17 Si 0.923 3.077 18 H -0.214 1.214 19 H -0.198 1.198 20 H -0.200 1.200 21 H 0.059 0.941 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.114 0.886 26 H 0.179 0.821 27 H 0.204 0.796 28 H 0.153 0.847 29 H 0.218 0.782 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.769 -3.304 -4.107 5.326 hybrid contribution -1.123 -0.898 -0.198 1.452 sum -1.892 -4.202 -4.305 6.307 Atomic orbital electron populations 1.21329 0.93021 1.01621 1.00772 1.21993 0.97274 0.98125 0.93195 0.92100 1.21186 0.93203 0.98523 0.98127 1.21256 0.96552 0.95723 0.94843 1.21894 0.93967 1.00158 1.02456 1.23161 0.98569 0.97215 0.89340 1.67620 1.25325 1.17810 1.11075 1.21996 0.89070 0.94420 0.99829 1.22618 0.99232 0.96977 0.95797 1.18422 0.81110 0.84736 0.92634 1.86303 1.42515 1.48807 1.59444 1.22665 1.23983 1.20028 1.00319 0.93442 1.26731 0.92810 0.98590 1.02768 1.70827 1.40404 1.42091 1.03355 0.83143 0.76544 0.75000 0.72974 1.21381 1.19820 1.20003 0.94114 0.91699 0.92228 0.89829 0.88552 0.82069 0.79569 0.84739 0.78197 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.16 8.59 71.98 0.62 -3.54 16 2 C -0.09 -3.82 2.43 -9.78 -0.02 -3.84 16 3 H 0.06 3.07 6.28 -2.39 -0.02 3.06 16 4 C -0.07 -2.77 6.21 30.49 0.19 -2.58 16 5 C -0.08 -3.11 5.27 -19.61 -0.10 -3.21 16 6 C -0.17 -5.77 10.11 22.35 0.23 -5.55 16 7 C 0.07 2.64 11.19 84.68 0.95 3.59 16 8 N -0.51 -21.68 10.36 -195.75 -2.03 -23.70 16 9 C 0.10 4.75 10.97 84.72 0.93 5.68 16 10 C -0.14 -6.65 3.36 -19.63 -0.07 -6.72 16 11 C 0.27 12.98 0.91 -11.65 -0.01 12.97 16 12 O -0.57 -24.86 11.52 -148.98 -1.72 -26.58 16 13 C -0.63 -33.80 8.29 25.60 0.21 -33.59 16 14 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 15 C -0.01 -0.38 4.95 84.66 0.42 0.04 16 16 N -0.93 -53.45 12.62 21.44 0.27 -53.18 16 17 Si 1.10 49.31 29.90 68.60 2.05 51.36 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.06 2.15 7.42 -2.39 -0.02 2.14 16 24 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 25 H 0.10 3.19 7.84 -2.39 -0.02 3.17 16 26 H 0.16 4.22 8.06 -2.91 -0.02 4.19 16 27 H 0.19 4.88 8.06 -2.91 -0.02 4.86 16 28 H 0.14 6.27 8.06 -2.91 -0.02 6.24 16 29 H 0.37 14.42 9.07 -74.05 -0.67 13.75 16 30 H 0.28 15.55 3.70 -92.70 -0.34 15.21 16 Total: -1.00 -64.22 248.72 2.82 -61.40 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.90 Total: 27.45 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 3.34 Total: -36.74 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -1.76 Total: -76.89 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -1.72 Total: -26.58 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.05 Total: 51.36 kcal Total: -64.22 2.82 -61.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260725148.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.997 kcal (2) G-P(sol) polarization free energy of solvation -64.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds