Wall clock time and date at job start Mon Mar 30 2020 02:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99685 * 2 1 4 4 H 1.48506 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47273 * 299.99176 * 3 2 1 6 6 H 1.48498 * 109.47387 * 59.99975 * 3 2 1 7 7 C 1.37871 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00266 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.79317 * 59.99333 * 9 7 2 11 11 C 1.53434 * 109.80062 * 180.80089 * 9 7 2 12 12 C 1.52843 * 108.85429 * 182.86559 * 11 9 7 13 13 C 1.50595 * 110.51563 * 308.59784 * 12 11 9 14 14 C 1.38517 * 118.88803 * 200.65202 * 13 12 11 15 15 C 1.38527 * 120.27220 * 180.14806 * 14 13 12 16 16 O 1.36007 * 119.98177 * 180.02562 * 15 14 13 17 17 C 1.38725 * 120.04177 * 0.02562 * 15 14 13 18 18 C 1.38021 * 119.85284 * 359.91455 * 17 15 14 19 19 C 1.38576 * 121.50665 * 20.67163 * 13 12 11 20 20 N 1.40215 * 120.79592 * 359.54199 * 19 13 12 21 21 H 0.97000 * 120.00504 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.57184 * 302.67640 * 11 9 7 23 23 H 1.08998 * 109.57130 * 62.92902 * 11 9 7 24 24 H 1.09002 * 109.27086 * 68.87054 * 12 11 9 25 25 H 1.09003 * 109.26115 * 188.36789 * 12 11 9 26 26 H 1.08006 * 119.86603 * 0.14482 * 14 13 12 27 27 H 0.96702 * 114.00103 * 270.00770 * 16 15 14 28 28 H 1.08007 * 120.07207 * 179.90118 * 17 15 14 29 29 H 1.08001 * 119.94482 * 179.97438 * 18 17 15 30 30 H 0.96998 * 120.54628 * 193.52436 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6226 -2.5626 -0.8878 11 6 2.2413 -3.6709 0.0214 12 6 1.4577 -4.9812 -0.0513 13 6 0.3771 -5.0087 0.9973 14 6 -0.1466 -6.2306 1.3866 15 6 -1.1436 -6.2891 2.3465 16 8 -1.6532 -7.4920 2.7247 17 6 -1.6227 -5.1214 2.9223 18 6 -1.1025 -3.9022 2.5379 19 6 -0.1004 -3.8436 1.5759 20 7 0.4182 -2.5941 1.2072 21 1 -0.4851 0.8400 -0.0004 22 1 2.9112 -3.5981 -0.8353 23 1 2.8225 -3.6415 0.9430 24 1 1.0040 -5.0748 -1.0380 25 1 2.1383 -5.8168 0.1122 26 1 0.2239 -7.1414 0.9398 27 1 -2.4137 -7.7793 2.2009 28 1 -2.4012 -5.1663 3.6696 29 1 -1.4746 -2.9922 2.9849 30 1 0.2305 -1.8058 1.7402 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260739599.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:21 Heat of formation + Delta-G solvation = -50.584570 kcal Electronic energy + Delta-G solvation = -14478.005638 eV Core-core repulsion = 12043.488834 eV Total energy + Delta-G solvation = -2434.516804 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88720 -38.68250 -36.34833 -34.50694 -33.69454 -31.05797 -29.70938 -27.28635 -24.82257 -23.43021 -23.18470 -20.55736 -18.84547 -18.57149 -17.74213 -16.84139 -16.46190 -16.01809 -15.49840 -14.93275 -14.71405 -14.31678 -14.08719 -13.77723 -13.64919 -13.20591 -12.85751 -12.72438 -12.40528 -12.27282 -11.96614 -11.64964 -11.09552 -11.00613 -10.78995 -10.31036 -9.58040 -8.24669 -7.81045 -6.43300 0.54350 0.75375 1.38738 1.42591 1.53543 2.36509 2.82994 2.92631 3.39824 3.57740 4.00517 4.09793 4.36196 4.40601 4.46905 4.68925 4.77683 4.89405 5.09835 5.10813 5.21385 5.32211 5.44710 5.54249 5.64357 5.72245 5.75283 6.00377 6.05356 6.60597 7.00508 7.10321 7.30068 7.38850 8.81497 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.052700 B = 0.007593 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.178098 B = 3686.535856 C = 4093.281393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.549 4.549 8 H 0.065 0.935 9 C 0.270 3.730 10 H -0.008 1.008 11 C -0.119 4.119 12 C -0.064 4.064 13 C -0.170 4.170 14 C -0.095 4.095 15 C 0.017 3.983 16 O -0.505 6.505 17 C -0.098 4.098 18 C -0.207 4.207 19 C 0.201 3.799 20 N -0.717 5.717 21 H 0.266 0.734 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.140 0.860 27 H 0.396 0.604 28 H 0.140 0.860 29 H 0.117 0.883 30 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 -9.135 2.133 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.587 4.587 8 H 0.083 0.917 9 C 0.167 3.833 10 H 0.009 0.991 11 C -0.157 4.157 12 C -0.101 4.101 13 C -0.175 4.175 14 C -0.114 4.114 15 C -0.029 4.029 16 O -0.316 6.316 17 C -0.117 4.117 18 C -0.231 4.231 19 C 0.092 3.908 20 N -0.341 5.341 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.158 0.842 27 H 0.253 0.747 28 H 0.158 0.842 29 H 0.135 0.865 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -1.006 -8.962 2.344 9.318 hybrid contribution -0.351 1.503 -0.190 1.556 sum -1.358 -7.459 2.154 7.881 Atomic orbital electron populations 1.70094 1.07234 1.27851 1.49401 1.25866 0.95675 1.02752 0.93356 0.85444 0.79104 0.79074 0.77623 1.19003 1.20590 1.20570 1.21609 0.93612 0.91178 1.52331 0.91656 1.18626 0.87794 0.93426 0.83419 0.99061 1.21794 0.97988 0.94713 1.01247 1.20304 0.95135 0.98157 0.96499 1.19396 1.02637 0.91406 1.04096 1.21197 0.97032 0.96956 0.96244 1.18048 0.99826 0.84986 1.00081 1.84827 1.51757 1.33772 1.61274 1.21217 0.99781 0.90970 0.99746 1.20674 1.00555 0.98411 1.03444 1.18390 0.91697 0.87236 0.93470 1.45939 1.53811 1.05295 1.29080 0.92532 0.90903 0.93222 0.91473 0.89309 0.84200 0.74740 0.84243 0.86509 0.77432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.12 12.37 21.44 0.27 -49.85 16 2 C 0.03 1.34 5.21 84.65 0.44 1.78 16 3 Si 0.96 41.53 29.54 68.60 2.03 43.56 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -28.92 8.71 25.60 0.22 -28.69 16 8 H 0.07 3.37 7.75 -2.91 -0.02 3.34 16 9 C 0.27 13.39 2.76 44.31 0.12 13.51 16 10 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 11 C -0.12 -4.85 5.36 30.69 0.16 -4.69 16 12 C -0.06 -2.24 5.77 29.76 0.17 -2.07 16 13 C -0.17 -6.45 5.76 -19.75 -0.11 -6.56 16 14 C -0.10 -3.10 9.60 22.41 0.22 -2.88 16 15 C 0.02 0.54 6.70 22.46 0.15 0.69 16 16 O -0.51 -13.22 13.50 -93.63 -1.26 -14.49 16 17 C -0.10 -3.19 9.99 22.33 0.22 -2.97 16 18 C -0.21 -7.88 9.87 22.41 0.22 -7.66 16 19 C 0.20 8.52 6.48 38.07 0.25 8.77 16 20 N -0.72 -34.42 5.27 -320.66 -1.69 -36.11 16 21 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 22 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 23 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.09 2.58 8.12 -2.39 -0.02 2.56 16 26 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 27 H 0.40 6.37 9.06 -74.06 -0.67 5.70 16 28 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 29 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 30 H 0.39 19.86 7.73 -92.71 -0.72 19.14 16 Total: -1.00 -59.48 255.93 1.17 -58.30 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.23 Total: 29.38 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 2.07 Total: -30.78 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -1.42 Total: -85.96 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -1.26 Total: -14.49 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -59.48 1.17 -58.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260739599.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.716 kcal (2) G-P(sol) polarization free energy of solvation -59.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds