Wall clock time and date at job start Mon Mar 30 2020 02:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00039 * 2 1 4 4 H 1.48498 * 109.47432 * 239.99674 * 3 2 1 5 5 H 1.48498 * 109.47286 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47397 * 119.99675 * 3 2 1 7 7 C 1.37879 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00385 * 185.12477 * 7 2 1 9 9 C 1.50703 * 119.99918 * 5.13570 * 7 2 1 10 10 H 1.09000 * 109.43403 * 24.77597 * 9 7 2 11 11 C 1.53072 * 109.43061 * 264.87202 * 9 7 2 12 12 C 1.53403 * 108.29418 * 191.68838 * 11 9 7 13 13 O 1.42825 * 108.36117 * 64.74157 * 12 11 9 14 14 C 1.35974 * 117.86207 * 310.78695 * 13 12 11 15 15 C 1.39134 * 118.41567 * 196.99459 * 14 13 12 16 16 C 1.37925 * 120.32298 * 180.44261 * 15 14 13 17 17 C 1.38890 * 119.87517 * 359.97094 * 16 15 14 18 18 N 1.39935 * 120.08606 * 179.90234 * 17 16 15 19 19 C 1.38697 * 119.82186 * 359.92382 * 17 16 15 20 20 C 1.38360 * 121.76800 * 17.25739 * 14 13 12 21 21 H 0.96995 * 119.99631 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.69697 * 311.38501 * 11 9 7 23 23 H 1.08997 * 109.69935 * 71.98634 * 11 9 7 24 24 H 1.09000 * 109.68644 * 184.44869 * 12 11 9 25 25 H 1.09001 * 109.68816 * 305.01346 * 12 11 9 26 26 H 1.08003 * 119.84355 * 0.41287 * 15 14 13 27 27 H 1.07992 * 120.06214 * 179.97438 * 16 15 14 28 28 H 0.96996 * 119.99876 * 180.02562 * 18 17 16 29 29 H 0.96998 * 120.00223 * 0.02562 * 18 17 16 30 30 H 1.07995 * 119.86193 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0841 9 6 1.2556 -2.4966 -0.1157 10 1 0.3022 -2.3234 -0.6147 11 6 1.0026 -3.0651 1.2828 12 6 0.5106 -4.5104 1.1334 13 8 1.5638 -5.2873 0.5616 14 6 2.1791 -4.8033 -0.5502 15 6 2.9373 -5.6785 -1.3214 16 6 3.5857 -5.2274 -2.4521 17 6 3.4813 -3.8932 -2.8236 18 7 4.1390 -3.4304 -3.9687 19 6 2.7238 -3.0208 -2.0562 20 6 2.0723 -3.4748 -0.9218 21 1 -0.4849 0.8400 -0.0004 22 1 1.9280 -3.0497 1.8586 23 1 0.2438 -2.4692 1.7899 24 1 0.2480 -4.9119 2.1121 25 1 -0.3612 -4.5357 0.4796 26 1 3.0189 -6.7162 -1.0332 27 1 4.1734 -5.9104 -3.0474 28 1 4.0656 -2.4983 -4.2268 29 1 4.6684 -4.0416 -4.5045 30 1 2.6419 -1.9833 -2.3447 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260739656.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:24 Heat of formation + Delta-G solvation = -25.770925 kcal Electronic energy + Delta-G solvation = -14703.541359 eV Core-core repulsion = 12270.100555 eV Total energy + Delta-G solvation = -2433.440804 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67917 -37.15486 -34.33479 -33.15220 -31.57155 -29.52090 -27.73920 -26.05754 -23.16746 -22.42659 -21.34460 -18.87730 -16.88722 -16.70427 -16.20935 -15.93336 -14.74415 -14.54783 -14.19963 -13.22014 -12.90312 -12.72518 -12.51367 -12.34345 -12.23949 -11.45507 -10.98547 -10.94728 -10.84709 -10.53784 -10.21325 -9.89992 -9.29267 -9.10697 -8.95779 -8.48289 -7.80277 -6.49412 -6.09749 -4.12941 2.20680 2.42167 3.27279 3.32449 3.35448 4.20318 4.36800 4.45267 4.69562 5.18733 5.65928 5.70515 5.85123 5.95104 6.06717 6.19559 6.21475 6.42640 6.67115 6.84747 6.89848 6.95473 7.07603 7.27804 7.51869 7.60866 7.77458 7.84780 8.03818 8.28998 8.32239 8.41982 8.94686 9.50290 10.98728 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.011760 C = 0.008470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.903191 B = 2380.392681 C = 3305.009604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.068 3.932 10 H 0.071 0.929 11 C -0.141 4.141 12 C 0.058 3.942 13 O -0.331 6.331 14 C 0.060 3.940 15 C -0.116 4.116 16 C -0.187 4.187 17 C 0.169 3.831 18 N -0.889 5.889 19 C -0.141 4.141 20 C -0.068 4.068 21 H 0.263 0.737 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.393 0.607 29 H 0.388 0.612 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -6.673 -3.720 8.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.050 3.950 10 H 0.089 0.911 11 C -0.179 4.179 12 C -0.017 4.017 13 O -0.246 6.246 14 C 0.014 3.986 15 C -0.136 4.136 16 C -0.210 4.210 17 C 0.067 3.933 18 N -0.430 5.430 19 C -0.164 4.164 20 C -0.070 4.070 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.070 0.930 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.221 0.779 29 H 0.215 0.785 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.650 -6.733 -3.548 8.441 hybrid contribution 0.543 1.307 -0.301 1.447 sum 4.193 -5.426 -3.849 7.864 Atomic orbital electron populations 1.69915 1.05946 1.26951 1.50165 1.24992 0.94864 0.99193 0.94736 0.86642 0.79596 0.82936 0.78777 1.20180 1.21295 1.20177 1.20926 0.93196 0.89499 1.50468 0.92468 1.17944 0.96134 0.91119 0.89828 0.91110 1.22345 1.01075 0.92986 1.01468 1.23003 0.88202 0.93393 0.97119 1.85843 1.49434 1.48717 1.40608 1.18615 0.98766 0.92063 0.89121 1.20114 1.00347 0.98351 0.94760 1.20061 1.07023 0.94028 0.99891 1.17750 0.94332 0.92837 0.88348 1.42311 1.58895 1.12876 1.28960 1.20532 1.00351 0.99420 0.96058 1.20538 0.98169 0.92386 0.95898 0.92726 0.92398 0.90853 0.89481 0.93044 0.86630 0.87023 0.77913 0.78479 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 12.84 55.43 0.71 -24.29 16 2 C 0.06 1.73 5.45 -17.82 -0.10 1.63 16 3 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.50 -13.48 7.00 -34.44 -0.24 -13.72 16 8 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 9 C 0.07 1.70 2.38 -92.85 -0.22 1.48 16 10 H 0.07 1.94 7.37 -51.93 -0.38 1.56 16 11 C -0.14 -3.17 5.49 -26.49 -0.15 -3.31 16 12 C 0.06 1.12 7.03 37.37 0.26 1.39 16 13 O -0.33 -6.92 10.27 -19.66 -0.20 -7.12 16 14 C 0.06 1.28 6.47 -39.20 -0.25 1.03 16 15 C -0.12 -2.18 9.93 -39.36 -0.39 -2.57 16 16 C -0.19 -3.23 9.89 -39.45 -0.39 -3.62 16 17 C 0.17 3.07 6.75 -83.75 -0.57 2.50 16 18 N -0.89 -12.51 9.10 32.42 0.30 -12.21 16 19 C -0.14 -3.03 8.94 -39.32 -0.35 -3.38 16 20 C -0.07 -1.57 5.43 -104.45 -0.57 -2.14 16 21 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 22 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 23 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 24 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.12 1.90 8.06 -52.48 -0.42 1.47 16 27 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.39 5.13 8.84 -40.82 -0.36 4.77 16 29 H 0.39 4.37 8.85 -40.82 -0.36 4.00 16 30 H 0.13 2.85 7.35 -52.49 -0.39 2.47 16 LS Contribution 255.01 15.07 3.84 3.84 Total: -1.00 -29.00 255.01 -6.90 -35.91 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.57 Total: 8.74 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -2.96 Total: -20.72 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 1.01 Total: -36.50 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.20 Total: -7.12 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.00 -6.90 -35.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260739656.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.137 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds