Wall clock time and date at job start Mon Mar 30 2020 02:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00039 * 2 1 4 4 H 1.48498 * 109.47432 * 239.99674 * 3 2 1 5 5 H 1.48498 * 109.47286 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47397 * 119.99675 * 3 2 1 7 7 C 1.37879 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00385 * 185.12477 * 7 2 1 9 9 C 1.50703 * 119.99918 * 5.13570 * 7 2 1 10 10 H 1.09000 * 109.43403 * 24.77597 * 9 7 2 11 11 C 1.53072 * 109.43061 * 264.87202 * 9 7 2 12 12 C 1.53403 * 108.29418 * 191.68838 * 11 9 7 13 13 O 1.42825 * 108.36117 * 64.74157 * 12 11 9 14 14 C 1.35974 * 117.86207 * 310.78695 * 13 12 11 15 15 C 1.39134 * 118.41567 * 196.99459 * 14 13 12 16 16 C 1.37925 * 120.32298 * 180.44261 * 15 14 13 17 17 C 1.38890 * 119.87517 * 359.97094 * 16 15 14 18 18 N 1.39935 * 120.08606 * 179.90234 * 17 16 15 19 19 C 1.38697 * 119.82186 * 359.92382 * 17 16 15 20 20 C 1.38360 * 121.76800 * 17.25739 * 14 13 12 21 21 H 0.96995 * 119.99631 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.69697 * 311.38501 * 11 9 7 23 23 H 1.08997 * 109.69935 * 71.98634 * 11 9 7 24 24 H 1.09000 * 109.68644 * 184.44869 * 12 11 9 25 25 H 1.09001 * 109.68816 * 305.01346 * 12 11 9 26 26 H 1.08003 * 119.84355 * 0.41287 * 15 14 13 27 27 H 1.07992 * 120.06214 * 179.97438 * 16 15 14 28 28 H 0.96996 * 119.99876 * 180.02562 * 18 17 16 29 29 H 0.96998 * 120.00223 * 0.02562 * 18 17 16 30 30 H 1.07995 * 119.86193 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0841 9 6 1.2556 -2.4966 -0.1157 10 1 0.3022 -2.3234 -0.6147 11 6 1.0026 -3.0651 1.2828 12 6 0.5106 -4.5104 1.1334 13 8 1.5638 -5.2873 0.5616 14 6 2.1791 -4.8033 -0.5502 15 6 2.9373 -5.6785 -1.3214 16 6 3.5857 -5.2274 -2.4521 17 6 3.4813 -3.8932 -2.8236 18 7 4.1390 -3.4304 -3.9687 19 6 2.7238 -3.0208 -2.0562 20 6 2.0723 -3.4748 -0.9218 21 1 -0.4849 0.8400 -0.0004 22 1 1.9280 -3.0497 1.8586 23 1 0.2438 -2.4692 1.7899 24 1 0.2480 -4.9119 2.1121 25 1 -0.3612 -4.5357 0.4796 26 1 3.0189 -6.7162 -1.0332 27 1 4.1734 -5.9104 -3.0474 28 1 4.0656 -2.4983 -4.2268 29 1 4.6684 -4.0416 -4.5045 30 1 2.6419 -1.9833 -2.3447 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260739656.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:24 Heat of formation + Delta-G solvation = -44.625109 kcal Electronic energy + Delta-G solvation = -14704.358938 eV Core-core repulsion = 12270.100555 eV Total energy + Delta-G solvation = -2434.258383 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.26861 -38.64814 -36.19592 -34.54606 -33.52071 -31.09850 -29.28582 -27.91666 -24.92616 -24.05407 -22.96322 -20.52866 -18.64157 -18.35219 -17.88565 -17.37645 -16.47233 -16.17934 -15.78321 -14.84683 -14.70751 -14.41811 -14.17598 -13.87696 -13.75981 -13.10849 -12.82644 -12.79331 -12.55007 -12.29604 -12.07435 -11.59871 -11.21332 -10.88463 -10.59051 -10.37630 -9.45340 -8.17813 -7.91533 -6.25876 0.66251 0.88118 1.39637 1.40135 1.48611 2.39829 2.68533 3.10764 3.13340 3.22330 4.17961 4.20192 4.27156 4.29918 4.50843 4.63068 4.63905 4.87486 5.02217 5.08669 5.32281 5.36174 5.48338 5.57371 5.63057 5.75558 5.96556 6.06274 6.32579 6.64497 6.82613 6.88789 7.20940 7.39590 8.91539 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.011760 C = 0.008470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.903191 B = 2380.392681 C = 3305.009604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.046 0.954 9 C 0.066 3.934 10 H 0.033 0.967 11 C -0.135 4.135 12 C 0.065 3.935 13 O -0.333 6.333 14 C 0.033 3.967 15 C -0.109 4.109 16 C -0.176 4.176 17 C 0.178 3.822 18 N -0.872 5.872 19 C -0.168 4.168 20 C -0.098 4.098 21 H 0.264 0.736 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.125 0.875 25 H 0.051 0.949 26 H 0.145 0.855 27 H 0.155 0.845 28 H 0.399 0.601 29 H 0.407 0.593 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.437 -8.096 -4.605 10.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.182 4.182 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.048 3.952 10 H 0.051 0.949 11 C -0.173 4.173 12 C -0.010 4.010 13 O -0.249 6.249 14 C -0.012 4.012 15 C -0.128 4.128 16 C -0.198 4.198 17 C 0.074 3.926 18 N -0.415 5.415 19 C -0.191 4.191 20 C -0.099 4.099 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.142 0.858 25 H 0.070 0.930 26 H 0.162 0.838 27 H 0.173 0.827 28 H 0.227 0.773 29 H 0.237 0.763 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.294 -8.163 -4.467 10.706 hybrid contribution 0.100 1.688 -0.121 1.695 sum 5.394 -6.475 -4.587 9.595 Atomic orbital electron populations 1.70034 1.07244 1.27618 1.51316 1.25714 0.95628 1.02328 0.94545 0.85677 0.78449 0.79021 0.78961 1.19412 1.20805 1.19785 1.21108 0.92733 0.90947 1.50153 0.93584 1.17797 0.94662 0.91616 0.91147 0.94909 1.22169 1.00231 0.95221 0.99694 1.23032 0.87770 0.91239 0.98963 1.85827 1.49708 1.48620 1.40697 1.18869 1.00291 0.91950 0.90093 1.20520 0.98682 0.99265 0.94297 1.20521 1.05991 0.93932 0.99372 1.17794 0.93190 0.92947 0.88658 1.42254 1.57884 1.13714 1.27619 1.20422 1.02468 0.99140 0.97026 1.20401 0.99584 0.93060 0.96865 0.92748 0.93340 0.92282 0.85756 0.93028 0.83754 0.82726 0.77255 0.76288 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.66 12.84 21.45 0.28 -53.39 16 2 C 0.02 0.92 5.45 84.65 0.46 1.39 16 3 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.51 -28.54 7.00 25.60 0.18 -28.36 16 8 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 9 C 0.07 3.46 2.38 -12.24 -0.03 3.43 16 10 H 0.03 1.93 7.37 -2.39 -0.02 1.91 16 11 C -0.13 -6.28 5.49 30.75 0.17 -6.11 16 12 C 0.06 2.49 7.03 72.12 0.51 3.00 16 13 O -0.33 -13.58 10.27 -93.26 -0.96 -14.54 16 14 C 0.03 1.41 6.47 22.51 0.15 1.55 16 15 C -0.11 -3.73 9.93 22.41 0.22 -3.51 16 16 C -0.18 -5.38 9.89 22.35 0.22 -5.16 16 17 C 0.18 6.08 6.75 38.11 0.26 6.34 16 18 N -0.87 -22.00 9.10 -51.35 -0.47 -22.47 16 19 C -0.17 -7.28 8.94 22.44 0.20 -7.08 16 20 C -0.10 -4.58 5.43 -19.75 -0.11 -4.69 16 21 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 22 H 0.05 2.29 8.10 -2.39 -0.02 2.27 16 23 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 24 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 25 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 27 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 28 H 0.40 9.59 8.84 -92.71 -0.82 8.77 16 29 H 0.41 7.46 8.85 -92.71 -0.82 6.64 16 30 H 0.11 4.92 7.35 -2.91 -0.02 4.90 16 Total: -1.00 -64.30 255.01 2.63 -61.68 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.48 Total: 22.25 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 2.23 Total: -39.20 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -0.19 Total: -75.86 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.96 Total: -14.54 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -64.30 2.63 -61.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260739656.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.052 kcal (2) G-P(sol) polarization free energy of solvation -64.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds