Wall clock time and date at job start Mon Mar 30 2020 02:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00190 * 2 1 4 4 H 1.48493 * 109.47214 * 239.99883 * 3 2 1 5 5 H 1.48508 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47037 * 119.99380 * 3 2 1 7 7 C 1.37877 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99802 * 173.34617 * 7 2 1 9 9 C 1.50708 * 120.00175 * 353.34927 * 7 2 1 10 10 H 1.09004 * 109.69271 * 328.11398 * 9 7 2 11 11 C 1.53399 * 109.69859 * 207.55626 * 9 7 2 12 12 O 1.42823 * 108.36556 * 175.59872 * 11 9 7 13 13 C 1.35972 * 117.88798 * 49.13951 * 12 11 9 14 14 C 1.39136 * 118.40952 * 163.03836 * 13 12 11 15 15 C 1.37932 * 120.31862 * 179.55412 * 14 13 12 16 16 C 1.38881 * 119.87801 * 0.02970 * 15 14 13 17 17 N 1.39934 * 120.08914 * 180.09601 * 16 15 14 18 18 C 1.38690 * 119.82588 * 0.07621 * 16 15 14 19 19 C 1.38360 * 121.77477 * 342.77110 * 13 12 11 20 20 C 1.50783 * 121.40503 * 0.53345 * 19 13 12 21 21 H 0.97003 * 120.00446 * 174.57655 * 1 2 3 22 22 H 1.09007 * 109.68263 * 295.28525 * 11 9 7 23 23 H 1.09003 * 109.68903 * 55.84341 * 11 9 7 24 24 H 1.07992 * 119.84321 * 359.58918 * 14 13 12 25 25 H 1.08004 * 120.05639 * 180.02562 * 15 14 13 26 26 H 0.97000 * 120.00208 * 179.97438 * 17 16 15 27 27 H 0.97006 * 119.99880 * 359.97438 * 17 16 15 28 28 H 1.07995 * 119.87084 * 179.97438 * 18 16 15 29 29 H 1.09000 * 109.43470 * 222.07438 * 20 19 13 30 30 H 1.08995 * 109.43675 * 102.20391 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0790 -1.1973 -0.1078 9 6 1.2585 -2.4948 0.1523 10 1 0.3790 -2.3430 0.7780 11 6 2.1747 -3.5444 0.7941 12 8 1.4117 -4.7307 1.0188 13 6 0.6674 -5.2129 -0.0118 14 6 0.2134 -6.5263 0.0572 15 6 -0.5524 -7.0528 -0.9620 16 6 -0.8718 -6.2691 -2.0631 17 7 -1.6501 -6.7981 -3.0988 18 6 -0.4177 -4.9605 -2.1335 19 6 0.3520 -4.4329 -1.1102 20 6 0.8298 -3.0074 -1.2248 21 1 -0.4851 -0.8363 -0.0794 22 1 3.0063 -3.7646 0.1245 23 1 2.5566 -3.1676 1.7429 24 1 0.4613 -7.1363 0.9132 25 1 -0.9029 -8.0728 -0.9038 26 1 -1.8728 -6.2495 -3.8671 27 1 -1.9670 -7.7136 -3.0483 28 1 -0.6653 -4.3506 -2.9896 29 1 0.0223 -2.3839 -1.6086 30 1 1.6777 -2.9629 -1.9084 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260777762.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:15 Heat of formation + Delta-G solvation = -31.266048 kcal Electronic energy + Delta-G solvation = -14499.279673 eV Core-core repulsion = 12065.600583 eV Total energy + Delta-G solvation = -2433.679090 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89477 -37.42080 -34.49732 -33.54068 -31.84350 -29.57068 -27.92814 -24.99065 -24.33555 -22.01070 -21.94505 -19.17148 -17.16819 -17.02095 -16.47007 -16.10520 -14.86861 -14.12632 -13.95010 -13.71802 -13.48397 -12.93960 -12.72793 -12.60186 -12.04550 -11.64431 -11.57964 -11.23646 -10.83609 -10.37776 -10.14159 -9.82860 -9.55583 -9.13366 -8.59190 -8.44822 -8.21723 -6.76198 -6.43608 -4.17028 1.79535 2.11115 3.40806 3.42127 3.61125 4.07042 4.18683 4.34095 4.49596 5.23279 5.32267 5.36939 5.70299 5.84975 5.97084 6.04212 6.19007 6.34493 6.44671 6.55188 6.62265 6.65505 6.68622 7.05886 7.21969 7.28757 7.41291 7.72782 7.98323 8.02660 8.32025 8.35219 8.77387 9.56579 10.94891 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.046248 B = 0.007672 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.283586 B = 3648.725150 C = 4080.271286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 1.067 2.933 4 H -0.288 1.288 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.599 4.599 8 H 0.053 0.947 9 C -0.001 4.001 10 H 0.045 0.955 11 C 0.072 3.928 12 O -0.333 6.333 13 C 0.085 3.915 14 C -0.113 4.113 15 C -0.176 4.176 16 C 0.173 3.827 17 N -0.887 5.887 18 C -0.167 4.167 19 C -0.097 4.097 20 C -0.076 4.076 21 H 0.272 0.728 22 H 0.046 0.954 23 H 0.097 0.903 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.393 0.607 27 H 0.392 0.608 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -10.990 -3.902 11.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.895 3.105 4 H -0.214 1.214 5 H -0.207 1.207 6 H -0.213 1.213 7 C -0.637 4.637 8 H 0.071 0.929 9 C -0.019 4.019 10 H 0.063 0.937 11 C -0.002 4.002 12 O -0.248 6.248 13 C 0.038 3.962 14 C -0.132 4.132 15 C -0.198 4.198 16 C 0.071 3.929 17 N -0.429 5.429 18 C -0.189 4.189 19 C -0.099 4.099 20 C -0.113 4.113 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.115 0.885 24 H 0.141 0.859 25 H 0.136 0.864 26 H 0.221 0.779 27 H 0.219 0.781 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.978 -9.373 -3.576 10.079 hybrid contribution -0.020 -1.664 -0.652 1.788 sum -0.998 -11.037 -4.228 11.861 Atomic orbital electron populations 1.70781 1.06947 1.31111 1.45188 1.25863 0.96435 1.02669 0.93149 0.83577 0.74967 0.75354 0.76626 1.21399 1.20742 1.21287 1.21762 0.94715 0.91180 1.56021 0.92910 1.19498 0.96265 0.94108 0.92076 0.93677 1.23181 0.92940 0.82599 1.01513 1.85883 1.58785 1.44523 1.35578 1.18547 0.96312 0.92314 0.88980 1.20264 1.00679 0.92833 0.99401 1.20175 1.05378 0.99530 0.94741 1.17592 0.93402 0.92698 0.89160 1.42313 1.61103 1.16530 1.22969 1.20382 1.04001 0.94082 1.00473 1.20244 0.98325 0.97496 0.93797 1.20929 1.00233 0.88598 1.01555 0.91689 0.93605 0.88543 0.85941 0.86450 0.77933 0.78109 0.86557 0.91260 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.86 13.56 55.43 0.75 -26.10 16 2 C 0.02 0.67 5.45 -17.82 -0.10 0.58 16 3 Si 1.07 24.50 29.91 -169.99 -5.08 19.41 16 4 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.60 -16.30 8.30 -34.44 -0.29 -16.58 16 8 H 0.05 1.41 7.82 -52.49 -0.41 1.00 16 9 C 0.00 -0.01 1.94 -91.53 -0.18 -0.19 16 10 H 0.05 1.25 7.01 -51.93 -0.36 0.89 16 11 C 0.07 1.60 6.31 37.36 0.24 1.84 16 12 O -0.33 -7.26 10.27 -19.65 -0.20 -7.46 16 13 C 0.08 1.75 6.47 -39.20 -0.25 1.50 16 14 C -0.11 -1.96 9.93 -39.36 -0.39 -2.35 16 15 C -0.18 -2.69 9.89 -39.46 -0.39 -3.08 16 16 C 0.17 2.69 6.75 -83.75 -0.57 2.13 16 17 N -0.89 -10.12 9.10 32.41 0.30 -9.83 16 18 C -0.17 -3.00 9.51 -39.32 -0.37 -3.37 16 19 C -0.10 -2.02 5.75 -104.44 -0.60 -2.62 16 20 C -0.08 -1.74 5.12 -27.81 -0.14 -1.88 16 21 H 0.27 8.08 6.34 -40.82 -0.26 7.82 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 24 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 25 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 26 H 0.39 3.89 8.85 -40.82 -0.36 3.53 16 27 H 0.39 3.52 8.85 -40.82 -0.36 3.16 16 28 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.07 1.67 7.60 -51.93 -0.39 1.28 16 30 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 LS Contribution 254.61 15.07 3.84 3.84 Total: -1.00 -30.27 254.61 -6.92 -37.20 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -3.48 Total: 6.99 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -3.04 Total: -24.04 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 1.05 Total: -35.93 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.20 Total: -7.46 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.27 -6.92 -37.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260777762.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.932 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds