Wall clock time and date at job start Mon Mar 30 2020 02:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48496 * 109.47019 * 269.99545 * 3 2 1 5 5 H 1.48502 * 109.47379 * 29.99588 * 3 2 1 6 6 H 1.48507 * 109.47357 * 149.99620 * 3 2 1 7 7 C 1.37879 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99596 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.60923 * 300.33067 * 9 7 2 11 11 C 1.53386 * 109.60831 * 179.97438 * 9 7 2 12 12 C 1.53030 * 107.94032 * 172.01539 * 11 9 7 13 13 C 1.50815 * 109.68328 * 47.36340 * 12 11 9 14 14 C 1.38775 * 118.09086 * 164.54650 * 13 12 11 15 15 C 1.37986 * 120.58626 * 179.68105 * 14 13 12 16 16 C 1.38333 * 119.92536 * 359.92703 * 15 14 13 17 17 C 1.38191 * 119.88556 * 0.06999 * 16 15 14 18 18 O 1.36004 * 119.83173 * 180.02562 * 17 16 15 19 19 C 1.38161 * 122.02043 * 344.31284 * 13 12 11 20 20 N 1.39707 * 122.96566 * 0.71869 * 19 13 12 21 21 H 0.96998 * 119.99979 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.76960 * 52.40102 * 11 9 7 23 23 H 1.09001 * 109.80684 * 291.65071 * 11 9 7 24 24 H 1.09000 * 109.43596 * 287.30599 * 12 11 9 25 25 H 1.08994 * 109.43888 * 167.42905 * 12 11 9 26 26 H 1.08007 * 119.70374 * 359.41030 * 14 13 12 27 27 H 1.08000 * 120.03698 * 179.87673 * 15 14 13 28 28 H 1.07995 * 120.05516 * 180.09400 * 16 15 14 29 29 H 0.96705 * 114.00288 * 270.02283 * 18 17 16 30 30 H 1.00898 * 111.00032 * 214.35926 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6187 -2.5564 0.8866 11 6 2.2450 -3.6674 0.0005 12 6 1.4523 -4.9607 0.2028 13 6 0.2622 -4.9771 -0.7235 14 6 -0.3892 -6.1851 -0.9290 15 6 -1.4877 -6.2578 -1.7610 16 6 -1.9484 -5.1190 -2.3968 17 6 -1.3060 -3.9117 -2.1980 18 8 -1.7602 -2.7926 -2.8232 19 6 -0.1889 -3.8352 -1.3570 20 7 0.4234 -2.5888 -1.2041 21 1 -0.4850 0.8400 -0.0004 22 1 2.9606 -3.5427 0.8133 23 1 2.7725 -3.7035 -0.9526 24 1 1.1087 -5.0177 1.2356 25 1 2.0922 -5.8160 -0.0138 26 1 -0.0305 -7.0771 -0.4368 27 1 -1.9867 -7.2030 -1.9161 28 1 -2.8088 -5.1732 -3.0472 29 1 -1.3622 -2.6378 -3.6909 30 1 -0.2583 -1.8454 -1.2307 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260806798.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:51 Heat of formation + Delta-G solvation = -31.349809 kcal Electronic energy + Delta-G solvation = -14768.479054 eV Core-core repulsion = 12334.796332 eV Total energy + Delta-G solvation = -2433.682722 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.67226 -36.74295 -35.52267 -32.62891 -31.74787 -29.63379 -28.00653 -25.69510 -23.08834 -21.80003 -21.54938 -18.67921 -17.49766 -16.59309 -15.94131 -15.28497 -14.82499 -14.55120 -13.85608 -13.67050 -13.03011 -12.65259 -12.59972 -12.11462 -11.79596 -11.52414 -11.08202 -10.99225 -10.63334 -10.49689 -10.42037 -10.06416 -9.61992 -9.31593 -8.89688 -8.62141 -7.99669 -6.55738 -6.21892 -4.27373 1.84431 2.12114 3.24114 3.31109 3.33851 4.20559 4.31376 4.88020 4.98856 5.35285 5.43484 5.53667 5.75505 5.87114 5.93483 6.04363 6.16182 6.42890 6.54786 6.66791 6.74584 6.85772 6.90745 6.93820 7.13736 7.36931 7.43728 7.76512 7.98147 8.25618 8.52163 8.75436 8.85039 9.41944 10.88413 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.038692 B = 0.009611 C = 0.007979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.493424 B = 2912.708225 C = 3508.334000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.067 3.933 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.065 0.935 9 C 0.214 3.786 10 H 0.016 0.984 11 C -0.114 4.114 12 C -0.073 4.073 13 C -0.142 4.142 14 C -0.094 4.094 15 C -0.174 4.174 16 C -0.118 4.118 17 C 0.031 3.969 18 O -0.491 6.491 19 C 0.146 3.854 20 N -0.614 5.614 21 H 0.268 0.732 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.377 0.623 30 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 -8.415 -2.906 8.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.136 4.136 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.110 3.890 10 H 0.034 0.966 11 C -0.152 4.152 12 C -0.110 4.110 13 C -0.146 4.146 14 C -0.113 4.113 15 C -0.194 4.194 16 C -0.137 4.137 17 C -0.017 4.017 18 O -0.299 6.299 19 C 0.038 3.962 20 N -0.242 5.242 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.231 0.769 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.759 -8.180 -2.728 8.656 hybrid contribution 0.015 0.930 -0.087 0.934 sum -0.744 -7.250 -2.815 7.813 Atomic orbital electron populations 1.69651 1.06070 1.27625 1.50233 1.25091 0.94970 0.99715 0.93815 0.86416 0.79712 0.82575 0.78246 1.20456 1.21122 1.19762 1.21145 0.93303 0.89663 1.51084 0.91645 1.19211 0.90339 0.93456 0.86023 0.96632 1.21767 0.98319 0.93861 1.01282 1.20505 0.94119 0.98957 0.97469 1.19406 1.00675 0.92595 1.01969 1.20847 0.95741 0.96513 0.98179 1.20526 0.99372 0.97495 1.02036 1.21028 1.00018 0.91836 1.00810 1.18349 0.95676 0.86465 1.01216 1.84843 1.66798 1.42520 1.35730 1.19507 0.89504 0.92942 0.94213 1.56915 1.25781 1.02123 1.39345 0.92174 0.91822 0.92185 0.91740 0.92031 0.86960 0.86924 0.86579 0.76893 0.77481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 11.57 55.43 0.64 -24.44 16 2 C 0.07 1.80 5.37 -17.82 -0.10 1.71 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.51 -13.82 8.77 -34.44 -0.30 -14.13 16 8 H 0.07 1.72 7.75 -52.49 -0.41 1.32 16 9 C 0.21 5.40 2.40 -68.92 -0.17 5.23 16 10 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 11 C -0.11 -2.40 5.42 -26.52 -0.14 -2.54 16 12 C -0.07 -1.35 5.81 -27.81 -0.16 -1.51 16 13 C -0.14 -2.81 5.74 -104.40 -0.60 -3.40 16 14 C -0.09 -1.58 9.63 -39.48 -0.38 -1.96 16 15 C -0.17 -2.79 10.04 -39.64 -0.40 -3.19 16 16 C -0.12 -2.03 9.97 -39.56 -0.39 -2.43 16 17 C 0.03 0.62 6.68 -38.93 -0.26 0.36 16 18 O -0.49 -9.54 12.54 -19.75 -0.25 -9.79 16 19 C 0.15 3.21 6.24 -83.62 -0.52 2.69 16 20 N -0.61 -15.14 6.06 -53.02 -0.32 -15.46 16 21 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 22 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 28 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.38 5.68 9.07 45.56 0.41 6.09 16 30 H 0.39 10.41 5.95 -39.29 -0.23 10.18 16 LS Contribution 253.02 15.07 3.81 3.81 Total: -1.00 -29.02 253.02 -7.30 -36.32 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -2.74 Total: 12.90 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -3.42 Total: -19.16 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.32 Total: -39.90 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.25 Total: -9.79 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.02 -7.30 -36.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260806798.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.969 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds