Wall clock time and date at job start Mon Mar 30 2020 02:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48496 * 109.47019 * 269.99545 * 3 2 1 5 5 H 1.48502 * 109.47379 * 29.99588 * 3 2 1 6 6 H 1.48507 * 109.47357 * 149.99620 * 3 2 1 7 7 C 1.37879 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99596 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.60923 * 300.33067 * 9 7 2 11 11 C 1.53386 * 109.60831 * 179.97438 * 9 7 2 12 12 C 1.53030 * 107.94032 * 172.01539 * 11 9 7 13 13 C 1.50815 * 109.68328 * 47.36340 * 12 11 9 14 14 C 1.38775 * 118.09086 * 164.54650 * 13 12 11 15 15 C 1.37986 * 120.58626 * 179.68105 * 14 13 12 16 16 C 1.38333 * 119.92536 * 359.92703 * 15 14 13 17 17 C 1.38191 * 119.88556 * 0.06999 * 16 15 14 18 18 O 1.36004 * 119.83173 * 180.02562 * 17 16 15 19 19 C 1.38161 * 122.02043 * 344.31284 * 13 12 11 20 20 N 1.39707 * 122.96566 * 0.71869 * 19 13 12 21 21 H 0.96998 * 119.99979 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.76960 * 52.40102 * 11 9 7 23 23 H 1.09001 * 109.80684 * 291.65071 * 11 9 7 24 24 H 1.09000 * 109.43596 * 287.30599 * 12 11 9 25 25 H 1.08994 * 109.43888 * 167.42905 * 12 11 9 26 26 H 1.08007 * 119.70374 * 359.41030 * 14 13 12 27 27 H 1.08000 * 120.03698 * 179.87673 * 15 14 13 28 28 H 1.07995 * 120.05516 * 180.09400 * 16 15 14 29 29 H 0.96705 * 114.00288 * 270.02283 * 18 17 16 30 30 H 1.00898 * 111.00032 * 214.35926 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6187 -2.5564 0.8866 11 6 2.2450 -3.6674 0.0005 12 6 1.4523 -4.9607 0.2028 13 6 0.2622 -4.9771 -0.7235 14 6 -0.3892 -6.1851 -0.9290 15 6 -1.4877 -6.2578 -1.7610 16 6 -1.9484 -5.1190 -2.3968 17 6 -1.3060 -3.9117 -2.1980 18 8 -1.7602 -2.7926 -2.8232 19 6 -0.1889 -3.8352 -1.3570 20 7 0.4234 -2.5888 -1.2041 21 1 -0.4850 0.8400 -0.0004 22 1 2.9606 -3.5427 0.8133 23 1 2.7725 -3.7035 -0.9526 24 1 1.1087 -5.0177 1.2356 25 1 2.0922 -5.8160 -0.0138 26 1 -0.0305 -7.0771 -0.4368 27 1 -1.9867 -7.2030 -1.9161 28 1 -2.8088 -5.1732 -3.0472 29 1 -1.3622 -2.6378 -3.6909 30 1 -0.2583 -1.8454 -1.2307 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260806798.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:50 Heat of formation + Delta-G solvation = -51.442497 kcal Electronic energy + Delta-G solvation = -14769.350339 eV Core-core repulsion = 12334.796332 eV Total energy + Delta-G solvation = -2434.554007 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18088 -38.31781 -37.06679 -34.52468 -33.36744 -31.27936 -29.49558 -27.54752 -24.74192 -23.46028 -23.01030 -20.28112 -19.07623 -18.49425 -17.50754 -16.88592 -16.54319 -16.22973 -15.40336 -15.13434 -14.58822 -14.39704 -14.27088 -13.68079 -13.39656 -13.08606 -12.83363 -12.56776 -12.34486 -12.22989 -12.00814 -11.76920 -11.16527 -11.10689 -10.74909 -10.53429 -9.38792 -8.27377 -8.20862 -6.39285 0.44135 0.66994 1.40339 1.41351 1.52093 2.37708 2.77816 3.02701 3.48208 3.79323 3.94963 4.14850 4.34481 4.38660 4.46137 4.64481 4.72299 4.86411 5.00129 5.07098 5.17003 5.30662 5.39922 5.52145 5.55840 5.68021 5.75686 6.03627 6.09441 6.55576 6.79553 6.83930 7.07104 7.33963 8.83626 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.038692 B = 0.009611 C = 0.007979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.493424 B = 2912.708225 C = 3508.334000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.018 3.982 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.213 3.787 10 H -0.027 1.027 11 C -0.107 4.107 12 C -0.069 4.069 13 C -0.156 4.156 14 C -0.093 4.093 15 C -0.155 4.155 16 C -0.120 4.120 17 C 0.015 3.985 18 O -0.508 6.508 19 C 0.097 3.903 20 N -0.628 5.628 21 H 0.267 0.733 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.143 0.857 29 H 0.392 0.608 30 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.774 -10.497 -3.290 11.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.181 4.181 3 Si 0.794 3.206 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.107 3.893 10 H -0.009 1.009 11 C -0.145 4.145 12 C -0.106 4.106 13 C -0.160 4.160 14 C -0.112 4.112 15 C -0.175 4.175 16 C -0.139 4.139 17 C -0.033 4.033 18 O -0.318 6.318 19 C -0.008 4.008 20 N -0.255 5.255 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.167 0.833 27 H 0.173 0.827 28 H 0.160 0.840 29 H 0.248 0.752 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.701 -10.316 -3.127 10.803 hybrid contribution -0.107 1.445 0.009 1.449 sum -0.809 -8.871 -3.118 9.438 Atomic orbital electron populations 1.69799 1.07458 1.28182 1.51002 1.25900 0.95741 1.03071 0.93422 0.85395 0.78643 0.78351 0.78258 1.20134 1.20830 1.18847 1.21505 0.93513 0.91090 1.51189 0.91685 1.19091 0.90557 0.94615 0.85045 1.00941 1.21662 0.97737 0.93943 1.01176 1.20519 0.94003 0.98469 0.97620 1.19763 1.01278 0.93045 1.01913 1.21254 0.95470 0.96460 0.97979 1.21079 0.98248 0.98598 0.99559 1.21371 1.00369 0.91045 1.01097 1.18679 0.95675 0.87583 1.01326 1.84780 1.67049 1.43067 1.36881 1.19851 0.91605 0.92597 0.96752 1.56907 1.26171 1.02969 1.39405 0.92331 0.91026 0.92821 0.91244 0.88518 0.83265 0.82656 0.83966 0.75165 0.79791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.81 11.57 21.45 0.25 -53.56 16 2 C 0.02 1.02 5.37 84.65 0.45 1.47 16 3 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.53 -29.79 8.77 25.60 0.22 -29.56 16 8 H 0.06 3.51 7.75 -2.91 -0.02 3.49 16 9 C 0.21 11.16 2.40 44.39 0.11 11.26 16 10 H -0.03 -1.59 8.11 -2.38 -0.02 -1.60 16 11 C -0.11 -4.54 5.42 30.73 0.17 -4.37 16 12 C -0.07 -2.44 5.81 29.89 0.17 -2.26 16 13 C -0.16 -5.94 5.74 -19.72 -0.11 -6.06 16 14 C -0.09 -2.78 9.63 22.34 0.22 -2.57 16 15 C -0.16 -4.27 10.04 22.23 0.22 -4.05 16 16 C -0.12 -3.81 9.97 22.28 0.22 -3.59 16 17 C 0.01 0.60 6.68 22.69 0.15 0.75 16 18 O -0.51 -20.11 12.54 -93.60 -1.17 -21.28 16 19 C 0.10 4.31 6.24 38.30 0.24 4.55 16 20 N -0.63 -32.31 6.06 -321.66 -1.95 -34.26 16 21 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 22 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 23 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 27 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 28 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 29 H 0.39 12.15 9.07 -74.05 -0.67 11.48 16 30 H 0.37 20.94 5.95 -89.70 -0.53 20.41 16 Total: -1.00 -65.13 253.02 1.17 -63.96 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.04 Total: 33.93 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 2.06 Total: -34.42 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -1.70 Total: -87.82 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -1.17 Total: -21.28 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -65.13 1.17 -63.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260806798.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.513 kcal (2) G-P(sol) polarization free energy of solvation -65.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds