Wall clock time and date at job start Mon Mar 30 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38702 * 119.75411 * 2 1 4 4 C 1.37631 * 120.39517 * 180.30367 * 3 2 1 5 5 C 1.40052 * 119.89691 * 359.47002 * 4 3 2 6 6 C 1.46649 * 120.24204 * 180.27726 * 5 4 3 7 7 O 1.21319 * 120.00376 * 174.23841 * 6 5 4 8 8 C 1.50699 * 119.99980 * 354.24044 * 6 5 4 9 9 C 1.50700 * 109.47580 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99489 * 0.02562 * 9 8 6 11 11 C 1.37870 * 120.00389 * 180.02562 * 9 8 6 12 12 N 1.31515 * 120.00153 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00129 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47065 * 60.00202 * 13 11 9 15 15 H 1.48505 * 109.46853 * 179.97438 * 13 11 9 16 16 H 1.48487 * 109.47206 * 299.99750 * 13 11 9 17 17 C 1.40660 * 119.52234 * 0.24813 * 5 4 3 18 18 N 1.38693 * 120.20326 * 179.97438 * 17 5 4 19 19 C 1.37933 * 119.75692 * 179.74654 * 2 1 3 20 20 H 1.09002 * 109.47306 * 270.25180 * 1 2 3 21 21 H 1.09001 * 109.47669 * 30.24932 * 1 2 3 22 22 H 1.08998 * 109.47442 * 150.25483 * 1 2 3 23 23 H 1.08002 * 119.80178 * 0.02562 * 3 2 1 24 24 H 1.07996 * 120.04804 * 179.74601 * 4 3 2 25 25 H 1.09001 * 109.47459 * 300.00344 * 8 6 5 26 26 H 1.09004 * 109.46966 * 59.99842 * 8 6 5 27 27 H 0.96994 * 120.00486 * 179.97438 * 12 11 9 28 28 H 0.97003 * 119.99838 * 5.47199 * 18 17 5 29 29 H 0.96999 * 120.00917 * 185.45813 * 18 17 5 30 30 H 1.07997 * 119.95370 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1953 1.2042 0.0000 4 6 3.5715 1.2196 -0.0063 5 6 4.2831 0.0133 -0.0015 6 6 5.7496 0.0210 -0.0020 7 8 6.3617 -1.0207 0.1076 8 6 6.4963 1.3228 -0.1387 9 6 7.9793 1.0568 -0.1098 10 1 8.3446 0.0460 -0.0036 11 6 8.8698 2.1037 -0.2190 12 7 8.4250 3.3345 -0.3488 13 14 10.7081 1.7739 -0.1839 14 1 11.0713 0.8752 -1.3090 15 1 11.4439 3.0568 -0.3184 16 1 11.0706 1.1275 1.1028 17 6 3.5811 -1.2056 0.0044 18 7 4.2716 -2.4084 0.0087 19 6 2.1915 -1.1974 0.0053 20 1 -0.3634 0.0045 1.0277 21 1 -0.3634 0.8877 -0.5177 22 1 -0.3634 -0.8922 -0.5098 23 1 1.6480 2.1353 0.0004 24 1 4.1017 2.1604 -0.0104 25 1 6.2302 1.7970 -1.0834 26 1 6.2298 1.9829 0.6868 27 1 9.0514 4.0711 -0.4252 28 1 5.2384 -2.4123 0.0877 29 1 3.7879 -3.2457 -0.0672 30 1 1.6468 -2.1300 0.0098 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260809769.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:08 Heat of formation + Delta-G solvation = -45.397230 kcal Electronic energy + Delta-G solvation = -14073.555299 eV Core-core repulsion = 11639.263435 eV Total energy + Delta-G solvation = -2434.291864 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10450 -39.11239 -35.80595 -35.05740 -33.58732 -30.99523 -29.73609 -28.34770 -25.66575 -23.47913 -22.57889 -20.67734 -18.64827 -18.06003 -17.20403 -17.04617 -16.66743 -15.81773 -15.40473 -15.03230 -14.78014 -14.61325 -14.52561 -13.96355 -13.43367 -13.06254 -12.91665 -12.80273 -12.65526 -12.57264 -12.14666 -11.97342 -11.43843 -11.40565 -10.63761 -10.18165 -9.65401 -8.49597 -8.25291 -6.34289 -0.08121 0.73385 1.38113 1.41220 1.49813 1.65698 2.39175 2.97943 3.04200 3.09625 3.50760 3.93047 4.08193 4.44135 4.49900 4.63443 4.76375 4.93595 4.95781 5.06925 5.09062 5.26800 5.30095 5.35961 5.54237 5.70385 5.73494 6.01539 6.11183 6.50245 6.76948 6.88410 7.10235 7.34462 8.86697 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.049892 B = 0.006729 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.081147 B = 4160.148066 C = 4698.228233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.006 4.006 3 C -0.201 4.201 4 C -0.026 4.026 5 C -0.291 4.291 6 C 0.403 3.597 7 O -0.508 6.508 8 C -0.016 4.016 9 C -0.545 4.545 10 H 0.057 0.943 11 C 0.009 3.991 12 N -0.925 5.925 13 Si 0.965 3.035 14 H -0.271 1.271 15 H -0.274 1.274 16 H -0.271 1.271 17 C 0.263 3.737 18 N -0.857 5.857 19 C -0.224 4.224 20 H 0.087 0.913 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.147 0.853 24 H 0.124 0.876 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.267 0.733 28 H 0.407 0.593 29 H 0.405 0.595 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.132 -6.505 0.498 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.007 4.007 3 C -0.221 4.221 4 C -0.045 4.045 5 C -0.297 4.297 6 C 0.289 3.711 7 O -0.389 6.389 8 C -0.052 4.052 9 C -0.583 4.583 10 H 0.076 0.924 11 C -0.190 4.190 12 N -0.565 5.565 13 Si 0.790 3.210 14 H -0.197 1.197 15 H -0.199 1.199 16 H -0.196 1.196 17 C 0.152 3.848 18 N -0.403 5.403 19 C -0.246 4.246 20 H 0.106 0.894 21 H 0.100 0.900 22 H 0.100 0.900 23 H 0.164 0.836 24 H 0.142 0.858 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.247 0.753 29 H 0.235 0.765 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.695 -6.844 0.535 17.131 hybrid contribution 1.479 -0.096 -0.024 1.482 sum -14.216 -6.940 0.512 15.828 Atomic orbital electron populations 1.20937 0.88151 1.04243 1.03712 1.20291 0.97792 0.91798 0.90831 1.21018 0.92828 0.99050 1.09181 1.21393 0.95181 0.96292 0.91637 1.20138 0.93899 0.94502 1.21181 1.22956 0.88570 0.91080 0.68534 1.89961 1.71701 1.35622 1.41613 1.19340 0.95291 0.92358 0.98260 1.21424 0.91973 0.94048 1.50851 0.92436 1.25838 1.04068 0.94669 0.94394 1.70036 1.36546 0.99452 1.50459 0.85503 0.78952 0.77670 0.78920 1.19663 1.19894 1.19635 1.18256 0.92291 0.85778 0.88505 1.43365 1.12389 1.05007 1.79580 1.20753 0.90397 0.99859 1.13630 0.89424 0.89972 0.90028 0.83566 0.85764 0.94198 0.94039 0.92391 0.75338 0.76490 0.83210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.00 71.23 0.71 -0.89 16 2 C -0.01 -0.14 5.88 -19.83 -0.12 -0.26 16 3 C -0.20 -5.37 9.66 22.24 0.21 -5.16 16 4 C -0.03 -0.91 9.46 22.57 0.21 -0.70 16 5 C -0.29 -11.54 5.88 -20.05 -0.12 -11.65 16 6 C 0.40 19.57 7.08 27.88 0.20 19.77 16 7 O -0.51 -25.89 12.76 -3.15 -0.04 -25.93 16 8 C -0.02 -0.85 4.14 29.10 0.12 -0.73 16 9 C -0.55 -32.95 8.92 25.60 0.23 -32.72 16 10 H 0.06 3.56 6.75 -2.91 -0.02 3.54 16 11 C 0.01 0.52 5.46 84.65 0.46 0.99 16 12 N -0.93 -55.68 13.29 21.44 0.28 -55.40 16 13 Si 0.97 45.97 29.54 68.60 2.03 47.99 16 14 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 17 C 0.26 8.78 6.77 38.82 0.26 9.04 16 18 N -0.86 -26.38 8.92 -50.85 -0.45 -26.83 16 19 C -0.22 -5.70 9.52 22.37 0.21 -5.49 16 20 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 21 H 0.08 0.97 8.08 -2.39 -0.02 0.96 16 22 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 23 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 24 H 0.12 4.44 6.99 -2.91 -0.02 4.42 16 25 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.04 2.31 7.91 -2.38 -0.02 2.29 16 27 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.41 14.80 5.35 -94.57 -0.51 14.30 16 29 H 0.41 9.03 8.84 -92.71 -0.82 8.21 16 30 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -69.56 261.32 4.05 -65.51 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.16 Total: 22.45 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 2.39 Total: -27.79 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -0.17 Total: -82.23 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.04 Total: -25.93 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -69.56 4.05 -65.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260809769.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.110 kcal (2) G-P(sol) polarization free energy of solvation -69.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds