Wall clock time and date at job start Mon Mar 30 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99681 * 2 1 4 4 H 1.48500 * 109.47290 * 264.76693 * 3 2 1 5 5 H 1.48495 * 109.47108 * 24.76837 * 3 2 1 6 6 H 1.48507 * 109.46828 * 144.76587 * 3 2 1 7 7 C 1.37875 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99803 * 1.06265 * 7 2 1 9 9 C 1.50698 * 120.00253 * 181.06483 * 7 2 1 10 10 H 1.08998 * 109.78639 * 328.15516 * 9 7 2 11 11 C 1.52884 * 109.63376 * 207.65423 * 9 7 2 12 12 C 1.50722 * 109.88985 * 189.91331 * 11 9 7 13 13 C 1.38600 * 118.44055 * 196.76586 * 12 11 9 14 14 C 1.38524 * 120.31309 * 180.15866 * 13 12 11 15 15 O 1.35902 * 120.14566 * 180.02562 * 14 13 12 16 16 C 1.38758 * 119.70740 * 0.03629 * 14 13 12 17 17 C 1.37907 * 119.81033 * 359.90499 * 16 14 13 18 18 C 1.37878 * 121.66241 * 16.81107 * 12 11 9 19 19 C 1.50639 * 121.83037 * 359.68505 * 18 12 11 20 20 N 1.46630 * 110.48438 * 17.51102 * 19 18 12 21 21 H 0.96997 * 120.00407 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.38664 * 69.80774 * 11 9 7 23 23 H 1.08997 * 109.39100 * 310.01647 * 11 9 7 24 24 H 1.08007 * 119.84074 * 0.14634 * 13 12 11 25 25 H 0.96704 * 114.00074 * 270.02501 * 15 14 13 26 26 H 1.08004 * 120.09367 * 179.97438 * 16 14 13 27 27 H 1.08002 * 119.77424 * 180.02562 * 17 16 14 28 28 H 1.08994 * 109.30579 * 137.82511 * 19 18 12 29 29 H 1.09003 * 109.30063 * 257.20240 * 19 18 12 30 30 H 1.00899 * 111.00348 * 183.99961 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6071 1.9827 -1.3942 5 1 1.3955 2.6820 0.5865 6 1 3.4870 1.4747 0.8078 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1292 -0.0183 9 6 3.5113 -1.1941 0.0237 10 1 3.8889 -0.3177 -0.5029 11 6 4.0358 -2.4631 -0.6487 12 6 5.5195 -2.5907 -0.4163 13 6 6.2412 -3.4592 -1.2199 14 6 7.6062 -3.6091 -1.0380 15 8 8.3106 -4.4613 -1.8283 16 6 8.2512 -2.8856 -0.0450 17 6 7.5299 -2.0215 0.7518 18 6 6.1626 -1.8703 0.5678 19 6 5.4223 -0.9101 1.4618 20 7 3.9809 -1.1756 1.4180 21 1 -0.4850 0.8400 0.0004 22 1 3.8403 -2.4122 -1.7198 23 1 3.5279 -3.3313 -0.2290 24 1 5.7368 -4.0219 -1.9916 25 1 8.3657 -5.3630 -1.4833 26 1 9.3151 -2.9979 0.1026 27 1 8.0325 -1.4583 1.5242 28 1 5.7785 -1.0233 2.4856 29 1 5.6108 0.1106 1.1288 30 1 3.4713 -0.4963 1.9627 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260817862.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:59 Heat of formation + Delta-G solvation = -22.529615 kcal Electronic energy + Delta-G solvation = -14469.180344 eV Core-core repulsion = 12035.880094 eV Total energy + Delta-G solvation = -2433.300250 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.83502 -37.59947 -35.26857 -32.56078 -32.09576 -29.76016 -28.69916 -25.31335 -23.66108 -21.94249 -21.53837 -19.19112 -17.66584 -16.94276 -16.12851 -15.55062 -14.84860 -14.53142 -14.09898 -13.75629 -13.32812 -13.28323 -12.89306 -12.41721 -12.09675 -11.92937 -11.39108 -11.04269 -10.94590 -10.64348 -10.28867 -10.15127 -9.70006 -9.21637 -8.74795 -8.51321 -8.07583 -7.45671 -6.20693 -4.23126 1.48832 1.62320 3.16418 3.25043 3.27152 3.84414 4.27104 4.37258 4.91049 5.06574 5.17862 5.27099 5.54304 5.59425 5.74636 5.88326 6.00353 6.10803 6.22304 6.33628 6.37207 6.58814 6.64444 6.69818 6.98987 7.01811 7.19182 7.47023 7.77171 8.06102 8.35454 8.52037 8.88308 9.40803 10.91930 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.048009 B = 0.008051 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.079141 B = 3476.921858 C = 3757.909256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.074 3.926 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.181 3.819 10 H 0.003 0.997 11 C -0.063 4.063 12 C -0.040 4.040 13 C -0.150 4.150 14 C 0.092 3.908 15 O -0.502 6.502 16 C -0.158 4.158 17 C -0.106 4.106 18 C -0.079 4.079 19 C 0.087 3.913 20 N -0.681 5.681 21 H 0.266 0.734 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.125 0.875 25 H 0.384 0.616 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.878 -4.310 0.771 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.129 4.129 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.545 4.545 8 H 0.098 0.902 9 C 0.074 3.926 10 H 0.021 0.979 11 C -0.100 4.100 12 C -0.040 4.040 13 C -0.168 4.168 14 C 0.048 3.952 15 O -0.312 6.312 16 C -0.176 4.176 17 C -0.124 4.124 18 C -0.079 4.079 19 C -0.043 4.043 20 N -0.315 5.315 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.100 0.900 24 H 0.143 0.857 25 H 0.239 0.761 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 13.832 -4.376 0.451 14.515 hybrid contribution 0.504 1.449 0.063 1.536 sum 14.336 -2.926 0.515 14.641 Atomic orbital electron populations 1.69883 1.06196 1.27172 1.49480 1.25104 0.94784 0.98925 0.94128 0.86894 0.79791 0.83934 0.78833 1.20147 1.21222 1.19620 1.20985 0.88081 0.94787 1.50654 0.90203 1.19524 0.95760 0.92160 0.85139 0.97921 1.20618 0.88183 1.00827 1.00416 1.19989 0.97313 0.93652 0.93078 1.21421 0.93005 1.01341 1.01075 1.18361 0.89836 0.94841 0.92186 1.84817 1.74538 1.23318 1.48526 1.21161 0.99939 1.00061 0.96472 1.20896 0.93448 0.98613 0.99480 1.19791 0.93260 0.98084 0.96783 1.20786 0.91657 0.94484 0.97367 1.61427 1.00090 1.54655 1.15327 0.92386 0.91122 0.90047 0.85687 0.76099 0.86056 0.86084 0.90913 0.95158 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 20.87 26.34 -169.99 -4.48 16.39 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.11 6.73 56.52 0.38 -5.73 16 7 C -0.51 -13.75 9.00 -34.44 -0.31 -14.06 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 C 0.18 4.22 1.89 -68.80 -0.13 4.09 16 10 H 0.00 0.08 5.82 -51.93 -0.30 -0.22 16 11 C -0.06 -1.30 5.24 -27.93 -0.15 -1.44 16 12 C -0.04 -0.74 5.77 -104.61 -0.60 -1.34 16 13 C -0.15 -2.45 9.59 -39.34 -0.38 -2.83 16 14 C 0.09 1.37 6.70 -39.28 -0.26 1.11 16 15 O -0.50 -6.45 13.51 -19.43 -0.26 -6.71 16 16 C -0.16 -2.23 9.99 -39.51 -0.39 -2.62 16 17 C -0.11 -1.58 9.64 -39.50 -0.38 -1.96 16 18 C -0.08 -1.40 5.79 -104.58 -0.61 -2.01 16 19 C 0.09 1.58 6.33 -5.15 -0.03 1.55 16 20 N -0.68 -14.67 6.59 -109.36 -0.72 -15.39 16 21 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 23 H 0.08 1.70 8.11 -51.93 -0.42 1.28 16 24 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 25 H 0.38 2.97 9.06 45.56 0.41 3.38 16 26 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 27 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.07 1.16 8.13 -51.93 -0.42 0.73 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.34 7.43 7.70 -39.29 -0.30 7.13 16 LS Contribution 252.41 15.07 3.80 3.80 Total: -1.00 -30.38 252.41 -6.95 -37.33 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -2.73 Total: 7.62 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -3.34 Total: -17.56 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.05 Total: -40.87 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.26 Total: -6.71 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.48 Total: 16.39 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.38 -6.95 -37.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260817862.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.802 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds