Wall clock time and date at job start Mon Mar 30 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.63303 * 60.39213 * 9 7 2 11 11 C 1.52894 * 109.63046 * 180.99025 * 9 7 2 12 12 C 1.50738 * 109.95852 * 170.14627 * 11 9 7 13 13 C 1.38732 * 118.42524 * 163.28798 * 12 11 9 14 14 C 1.37932 * 120.42770 * 179.56888 * 13 12 11 15 15 C 1.38756 * 119.76929 * 0.02562 * 14 13 12 16 16 O 1.35905 * 120.12638 * 180.02562 * 15 14 13 17 17 C 1.38503 * 119.74995 * 0.07384 * 15 14 13 18 18 C 1.37887 * 121.63834 * 343.01083 * 12 11 9 19 19 C 1.50625 * 121.84404 * 0.54169 * 18 12 11 20 20 N 1.46629 * 110.50134 * 342.41545 * 19 18 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.38837 * 290.29460 * 11 9 7 23 23 H 1.08999 * 109.38702 * 49.99500 * 11 9 7 24 24 H 1.07998 * 119.78290 * 359.54195 * 13 12 11 25 25 H 1.07995 * 120.11549 * 180.02562 * 14 13 12 26 26 H 0.96696 * 113.99534 * 270.02230 * 16 15 14 27 27 H 1.08006 * 119.83225 * 179.97438 * 17 15 14 28 28 H 1.09003 * 109.27099 * 222.14775 * 19 18 12 29 29 H 1.09002 * 109.24397 * 102.65985 * 19 18 12 30 30 H 1.00898 * 110.99994 * 289.11495 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6283 -2.5625 -0.8929 11 6 2.2412 -3.6640 0.0237 12 6 1.5073 -4.9581 0.2664 13 6 2.1568 -6.1496 -0.0218 14 6 1.5273 -7.3580 0.1929 15 6 0.2359 -7.3816 0.6999 16 8 -0.3910 -8.5681 0.9148 17 6 -0.4122 -6.1913 0.9854 18 6 0.2230 -4.9782 0.7678 19 6 -0.5243 -3.7108 1.0902 20 7 0.4041 -2.5811 1.2001 21 1 -0.4850 0.8401 0.0004 22 1 2.7612 -3.7167 -0.9327 23 1 2.9675 -3.5048 0.8207 24 1 3.1615 -6.1309 -0.4173 25 1 2.0377 -8.2825 -0.0329 26 1 -0.8953 -8.8897 0.1549 27 1 -1.4176 -6.2081 1.3797 28 1 -1.0529 -3.8353 2.0353 29 1 -1.2457 -3.5078 0.2987 30 1 0.9662 -2.6549 2.0348 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260828795.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:55 Heat of formation + Delta-G solvation = -21.168228 kcal Electronic energy + Delta-G solvation = -14425.947119 eV Core-core repulsion = 11992.705903 eV Total energy + Delta-G solvation = -2433.241216 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.79764 -37.54337 -35.06245 -32.53266 -31.60028 -29.57987 -28.26969 -24.87400 -23.57817 -21.87034 -21.57745 -19.40051 -17.74091 -16.73852 -15.43790 -15.37744 -14.78046 -14.41387 -13.84595 -13.71374 -13.31322 -12.94643 -12.74284 -12.10177 -11.90668 -11.51763 -11.08438 -10.91622 -10.66705 -10.56340 -10.42142 -10.29471 -9.69480 -8.98662 -8.46140 -8.39188 -7.97522 -6.95464 -5.87374 -4.01687 1.56176 1.64484 3.35863 3.40909 3.43006 3.89626 4.41626 4.48290 5.16450 5.20528 5.30494 5.43625 5.63270 5.72396 5.92158 5.99867 6.18887 6.27313 6.39650 6.42939 6.54112 6.66209 6.71214 6.78270 7.14578 7.22588 7.43198 7.80614 7.91183 8.21069 8.54494 8.82329 9.10917 9.67148 11.17544 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.066443 B = 0.006999 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.312206 B = 3999.678412 C = 4338.717731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.084 3.916 3 Si 0.884 3.116 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.221 3.779 10 H 0.040 0.960 11 C -0.113 4.113 12 C -0.073 4.073 13 C -0.111 4.111 14 C -0.154 4.154 15 C 0.084 3.916 16 O -0.503 6.503 17 C -0.144 4.144 18 C -0.093 4.093 19 C 0.093 3.907 20 N -0.639 5.639 21 H 0.256 0.744 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.121 0.879 25 H 0.120 0.880 26 H 0.383 0.617 27 H 0.122 0.878 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 -11.515 -0.031 11.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.575 4.575 8 H 0.073 0.927 9 C 0.114 3.886 10 H 0.058 0.942 11 C -0.152 4.152 12 C -0.073 4.073 13 C -0.129 4.129 14 C -0.173 4.173 15 C 0.040 3.960 16 O -0.313 6.313 17 C -0.163 4.163 18 C -0.096 4.096 19 C -0.038 4.038 20 N -0.265 5.265 21 H 0.066 0.934 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.139 0.861 25 H 0.138 0.862 26 H 0.237 0.763 27 H 0.140 0.860 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.313 -10.841 0.306 10.850 hybrid contribution 0.855 -0.152 -0.321 0.926 sum 0.542 -10.993 -0.016 11.006 Atomic orbital electron populations 1.70075 1.05753 1.25859 1.46679 1.24948 0.94619 0.98600 0.94095 0.86823 0.79747 0.83734 0.78481 1.21389 1.20341 1.20433 1.20892 0.92228 0.90099 1.54307 0.92749 1.19163 0.88825 0.90746 0.89875 0.94221 1.21448 0.99727 0.92760 1.01245 1.20128 0.94002 0.96035 0.97133 1.21047 0.99738 0.91591 1.00515 1.21223 0.95543 0.98247 1.02249 1.18361 0.92123 0.84723 1.00831 1.84816 1.68600 1.35941 1.41908 1.21371 1.00446 0.91516 1.02955 1.20963 0.94695 0.96850 0.97066 1.21067 0.96415 0.85661 1.00692 1.61353 1.22536 1.37192 1.05459 0.93376 0.91517 0.91333 0.86138 0.86228 0.76253 0.85959 0.91531 0.90346 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.31 12.78 55.43 0.71 -23.60 16 2 C 0.08 2.31 5.39 -17.82 -0.10 2.21 16 3 Si 0.88 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.54 -14.39 8.75 -34.44 -0.30 -14.70 16 8 H 0.05 1.43 7.75 -52.49 -0.41 1.02 16 9 C 0.22 5.38 2.31 -68.78 -0.16 5.22 16 10 H 0.04 1.08 8.05 -51.93 -0.42 0.66 16 11 C -0.11 -2.30 5.07 -27.92 -0.14 -2.44 16 12 C -0.07 -1.35 5.78 -104.55 -0.60 -1.96 16 13 C -0.11 -1.79 9.65 -39.51 -0.38 -2.17 16 14 C -0.15 -2.30 9.99 -39.50 -0.39 -2.70 16 15 C 0.08 1.28 6.70 -39.29 -0.26 1.02 16 16 O -0.50 -6.62 13.51 -19.44 -0.26 -6.89 16 17 C -0.14 -2.34 9.59 -39.33 -0.38 -2.72 16 18 C -0.09 -1.71 5.79 -104.64 -0.61 -2.32 16 19 C 0.09 1.82 6.34 -5.16 -0.03 1.79 16 20 N -0.64 -14.81 5.89 -109.34 -0.64 -15.45 16 21 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 22 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 23 H 0.07 1.39 8.11 -51.93 -0.42 0.96 16 24 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 25 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.38 3.11 9.06 45.56 0.41 3.52 16 27 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 28 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 29 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.32 7.15 8.74 -39.29 -0.34 6.81 16 LS Contribution 256.99 15.07 3.87 3.87 Total: -1.00 -29.79 256.99 -7.55 -37.34 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -2.85 Total: 7.56 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -3.36 Total: -18.76 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.06 Total: -39.05 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.26 Total: -6.89 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.79 -7.55 -37.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828795.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.167 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds