Wall clock time and date at job start Mon Mar 30 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.63303 * 60.39213 * 9 7 2 11 11 C 1.52894 * 109.63046 * 180.99025 * 9 7 2 12 12 C 1.50738 * 109.95852 * 170.14627 * 11 9 7 13 13 C 1.38732 * 118.42524 * 163.28798 * 12 11 9 14 14 C 1.37932 * 120.42770 * 179.56888 * 13 12 11 15 15 C 1.38756 * 119.76929 * 0.02562 * 14 13 12 16 16 O 1.35905 * 120.12638 * 180.02562 * 15 14 13 17 17 C 1.38503 * 119.74995 * 0.07384 * 15 14 13 18 18 C 1.37887 * 121.63834 * 343.01083 * 12 11 9 19 19 C 1.50625 * 121.84404 * 0.54169 * 18 12 11 20 20 N 1.46629 * 110.50134 * 342.41545 * 19 18 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.38837 * 290.29460 * 11 9 7 23 23 H 1.08999 * 109.38702 * 49.99500 * 11 9 7 24 24 H 1.07998 * 119.78290 * 359.54195 * 13 12 11 25 25 H 1.07995 * 120.11549 * 180.02562 * 14 13 12 26 26 H 0.96696 * 113.99534 * 270.02230 * 16 15 14 27 27 H 1.08006 * 119.83225 * 179.97438 * 17 15 14 28 28 H 1.09003 * 109.27099 * 222.14775 * 19 18 12 29 29 H 1.09002 * 109.24397 * 102.65985 * 19 18 12 30 30 H 1.00898 * 110.99994 * 289.11495 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6283 -2.5625 -0.8929 11 6 2.2412 -3.6640 0.0237 12 6 1.5073 -4.9581 0.2664 13 6 2.1568 -6.1496 -0.0218 14 6 1.5273 -7.3580 0.1929 15 6 0.2359 -7.3816 0.6999 16 8 -0.3910 -8.5681 0.9148 17 6 -0.4122 -6.1913 0.9854 18 6 0.2230 -4.9782 0.7678 19 6 -0.5243 -3.7108 1.0902 20 7 0.4041 -2.5811 1.2001 21 1 -0.4850 0.8401 0.0004 22 1 2.7612 -3.7167 -0.9327 23 1 2.9675 -3.5048 0.8207 24 1 3.1615 -6.1309 -0.4173 25 1 2.0377 -8.2825 -0.0329 26 1 -0.8953 -8.8897 0.1549 27 1 -1.4176 -6.2081 1.3797 28 1 -1.0529 -3.8353 2.0353 29 1 -1.2457 -3.5078 0.2987 30 1 0.9662 -2.6549 2.0348 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260828795.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:55 Heat of formation + Delta-G solvation = -42.570843 kcal Electronic energy + Delta-G solvation = -14426.875206 eV Core-core repulsion = 11992.705903 eV Total energy + Delta-G solvation = -2434.169303 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.12209 -38.85775 -36.53700 -34.36853 -33.20394 -31.01832 -29.85357 -26.72867 -25.09747 -23.20891 -23.18111 -20.95008 -18.95470 -18.65057 -16.87918 -16.63626 -16.29903 -16.10767 -15.43419 -15.37502 -14.72546 -14.39970 -14.23294 -13.83721 -13.43708 -12.99805 -12.79778 -12.62034 -12.38217 -12.15128 -12.14315 -11.62427 -11.45878 -10.94694 -10.49725 -9.72642 -9.30347 -8.70985 -7.94884 -6.16420 0.30215 0.38157 1.47373 1.48256 1.55360 2.49675 2.65408 3.25547 3.31602 3.87098 3.95644 4.03949 4.13551 4.31830 4.46553 4.55058 4.69198 4.82828 4.83944 5.01065 5.07764 5.17863 5.39130 5.44065 5.48483 5.78346 5.82057 5.93223 6.22781 6.61552 6.87700 7.02115 7.12439 7.56290 9.08751 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.066443 B = 0.006999 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.312206 B = 3999.678412 C = 4338.717731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.035 3.965 3 Si 0.950 3.050 4 H -0.288 1.288 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.553 4.553 8 H 0.055 0.945 9 C 0.223 3.777 10 H 0.001 0.999 11 C -0.100 4.100 12 C -0.099 4.099 13 C -0.108 4.108 14 C -0.149 4.149 15 C 0.094 3.906 16 O -0.506 6.506 17 C -0.149 4.149 18 C -0.108 4.108 19 C 0.098 3.902 20 N -0.659 5.659 21 H 0.255 0.745 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.141 0.859 25 H 0.150 0.850 26 H 0.408 0.592 27 H 0.137 0.863 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 -13.231 0.175 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.169 4.169 3 Si 0.776 3.224 4 H -0.213 1.213 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.591 4.591 8 H 0.073 0.927 9 C 0.115 3.885 10 H 0.019 0.981 11 C -0.138 4.138 12 C -0.099 4.099 13 C -0.126 4.126 14 C -0.167 4.167 15 C 0.050 3.950 16 O -0.319 6.319 17 C -0.168 4.168 18 C -0.111 4.111 19 C -0.032 4.032 20 N -0.286 5.286 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.159 0.841 25 H 0.168 0.832 26 H 0.267 0.733 27 H 0.155 0.845 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.415 -12.581 0.497 12.598 hybrid contribution 0.577 0.239 -0.398 0.740 sum 0.992 -12.342 0.099 12.382 Atomic orbital electron populations 1.70217 1.07198 1.26434 1.48026 1.25700 0.95394 1.01935 0.93868 0.85782 0.78433 0.79570 0.78663 1.21341 1.19789 1.19765 1.21302 0.92516 0.91542 1.53751 0.92709 1.18918 0.89055 0.91636 0.88872 0.98127 1.21156 0.98753 0.92570 1.01363 1.20045 0.94519 0.96014 0.99336 1.21219 1.00539 0.91005 0.99823 1.21534 0.95344 0.98873 1.00953 1.18414 0.92298 0.85035 0.99257 1.84756 1.68851 1.34660 1.43597 1.21476 1.01125 0.91166 1.03017 1.20756 0.94916 0.96801 0.98598 1.20938 0.95587 0.85713 1.01000 1.61123 1.22812 1.39680 1.04947 0.93624 0.91282 0.91488 0.84138 0.83224 0.73300 0.84546 0.89802 0.92180 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.88 12.78 21.45 0.27 -51.61 16 2 C 0.03 1.92 5.39 84.66 0.46 2.38 16 3 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 4 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.55 -30.26 8.75 25.60 0.22 -30.04 16 8 H 0.05 2.91 7.75 -2.91 -0.02 2.89 16 9 C 0.22 11.21 2.31 44.08 0.10 11.31 16 10 H 0.00 0.04 8.05 -2.39 -0.02 0.02 16 11 C -0.10 -4.09 5.07 29.82 0.15 -3.94 16 12 C -0.10 -3.61 5.78 -19.82 -0.11 -3.72 16 13 C -0.11 -3.22 9.65 22.32 0.22 -3.00 16 14 C -0.15 -3.90 9.99 22.32 0.22 -3.68 16 15 C 0.09 2.58 6.70 22.46 0.15 2.73 16 16 O -0.51 -11.27 13.51 -92.49 -1.25 -12.52 16 17 C -0.15 -4.55 9.59 22.43 0.22 -4.34 16 18 C -0.11 -3.93 5.79 -19.87 -0.12 -4.05 16 19 C 0.10 3.94 6.34 85.59 0.54 4.48 16 20 N -0.66 -31.42 5.89 -499.84 -2.94 -34.36 16 21 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 22 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 23 H 0.07 2.72 8.11 -2.39 -0.02 2.70 16 24 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 25 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 26 H 0.41 4.89 9.06 -74.06 -0.67 4.22 16 27 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 28 H 0.08 2.99 8.13 -2.39 -0.02 2.97 16 29 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.32 14.73 8.74 -89.70 -0.78 13.95 16 Total: -1.00 -64.11 256.99 -0.14 -64.25 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.29 Total: 20.58 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 2.05 Total: -31.87 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -2.67 Total: -85.97 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -1.25 Total: -12.52 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -64.11 -0.14 -64.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828795.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.679 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds