Wall clock time and date at job start Mon Mar 30 2020 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99875 * 2 1 4 4 H 1.48501 * 109.47234 * 239.99664 * 3 2 1 5 5 H 1.48501 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47179 * 119.99647 * 3 2 1 7 7 C 1.37885 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99755 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99726 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.62943 * 299.59601 * 9 7 2 11 11 C 1.52898 * 109.62811 * 179.00956 * 9 7 2 12 12 C 1.50738 * 109.96248 * 189.87777 * 11 9 7 13 13 C 1.38726 * 118.43138 * 196.78030 * 12 11 9 14 14 C 1.37928 * 120.43195 * 180.02562 * 13 12 11 15 15 C 1.38766 * 119.76873 * 0.50225 * 14 13 12 16 16 O 1.35896 * 120.12814 * 179.66229 * 15 14 13 17 17 C 1.38501 * 119.74513 * 359.38946 * 15 14 13 18 18 C 1.37883 * 121.63467 * 16.90764 * 12 11 9 19 19 C 1.50623 * 121.85109 * 359.55372 * 18 12 11 20 20 N 1.46633 * 110.50068 * 17.53635 * 19 18 12 21 21 H 0.96991 * 120.00306 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.38409 * 310.02473 * 11 9 7 23 23 H 1.08995 * 109.38996 * 69.82902 * 11 9 7 24 24 H 1.07997 * 119.78204 * 0.27574 * 13 12 11 25 25 H 1.08001 * 120.11664 * 180.23533 * 14 13 12 26 26 H 0.96700 * 114.00170 * 269.72742 * 16 15 14 27 27 H 1.08000 * 119.83307 * 180.31951 * 17 15 14 28 28 H 1.09003 * 109.27406 * 137.80190 * 19 18 12 29 29 H 1.09009 * 109.27297 * 257.30903 * 19 18 12 30 30 H 1.00897 * 110.99677 * 70.87147 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6285 -2.5625 0.8930 11 6 2.2412 -3.6640 -0.0237 12 6 1.5076 -4.9581 -0.2670 13 6 2.1564 -6.1496 0.0224 14 6 1.5240 -7.3577 -0.1849 15 6 0.2341 -7.3814 -0.6961 16 8 -0.3933 -8.5678 -0.9097 17 6 -0.4135 -6.1911 -0.9825 18 6 0.2228 -4.9781 -0.7673 19 6 -0.5244 -3.7107 -1.0898 20 7 0.4040 -2.5811 -1.2001 21 1 -0.4850 0.8399 -0.0004 22 1 2.9678 -3.5046 -0.8204 23 1 2.7597 -3.7181 0.9335 24 1 3.1617 -6.1310 0.4165 25 1 2.0325 -8.2822 0.0458 26 1 -0.2525 -8.9336 -1.7937 27 1 -1.4193 -6.2077 -1.3756 28 1 -1.0532 -3.8353 -2.0348 29 1 -1.2456 -3.5069 -0.2982 30 1 0.9661 -2.6552 -2.0347 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260828797.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:59 Heat of formation + Delta-G solvation = -21.076613 kcal Electronic energy + Delta-G solvation = -14425.829748 eV Core-core repulsion = 11992.592505 eV Total energy + Delta-G solvation = -2433.237243 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.79848 -37.54603 -35.06415 -32.53230 -31.60017 -29.58097 -28.26988 -24.87356 -23.57901 -21.87061 -21.57499 -19.41770 -17.71036 -16.73405 -15.45626 -15.39071 -14.82544 -14.41228 -13.83915 -13.66281 -13.25949 -12.92314 -12.80847 -12.09441 -11.95448 -11.55277 -10.96502 -10.90749 -10.72890 -10.57401 -10.43179 -10.28671 -9.69032 -8.98778 -8.46200 -8.39045 -7.96485 -6.96150 -5.87080 -4.01520 1.56163 1.64462 3.35876 3.41024 3.42953 3.89942 4.40424 4.48443 5.16512 5.20702 5.30405 5.43625 5.63293 5.72365 5.92158 6.00779 6.17741 6.27298 6.38774 6.42731 6.55528 6.66253 6.71295 6.78536 7.14636 7.22585 7.43595 7.80480 7.91287 8.21323 8.54282 8.82302 9.11018 9.67302 11.17855 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.066537 B = 0.006998 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.715554 B = 4000.381616 C = 4339.532627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.084 3.916 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.221 3.779 10 H 0.040 0.960 11 C -0.113 4.113 12 C -0.073 4.073 13 C -0.111 4.111 14 C -0.154 4.154 15 C 0.084 3.916 16 O -0.503 6.503 17 C -0.144 4.144 18 C -0.093 4.093 19 C 0.092 3.908 20 N -0.639 5.639 21 H 0.256 0.744 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.121 0.879 25 H 0.120 0.880 26 H 0.382 0.618 27 H 0.122 0.878 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 -11.594 -3.010 12.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.575 4.575 8 H 0.073 0.927 9 C 0.114 3.886 10 H 0.058 0.942 11 C -0.151 4.151 12 C -0.073 4.073 13 C -0.129 4.129 14 C -0.173 4.173 15 C 0.040 3.960 16 O -0.312 6.312 17 C -0.163 4.163 18 C -0.096 4.096 19 C -0.039 4.039 20 N -0.265 5.265 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.139 0.861 25 H 0.138 0.862 26 H 0.237 0.763 27 H 0.140 0.860 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.428 -10.889 -2.197 11.116 hybrid contribution 1.218 -0.178 -0.604 1.371 sum 1.646 -11.067 -2.801 11.534 Atomic orbital electron populations 1.70071 1.05754 1.25873 1.46654 1.24948 0.94615 0.98598 0.94101 0.86824 0.79743 0.83747 0.78473 1.20357 1.21389 1.20422 1.20889 0.92219 0.90089 1.54327 0.92747 1.19170 0.88839 0.90743 0.89893 0.94203 1.21449 0.99733 0.92747 1.01217 1.20129 0.94087 0.96033 0.97063 1.21044 0.99732 0.91600 1.00515 1.21222 0.94466 0.98306 1.03259 1.18363 0.91425 0.84807 1.01447 1.84823 1.73716 1.35285 1.37382 1.21375 1.00398 0.91606 1.02923 1.20966 0.94613 0.96838 0.97155 1.21071 0.96421 0.85658 1.00701 1.61360 1.22502 1.37200 1.05435 0.93364 0.91356 0.91513 0.86139 0.86224 0.76311 0.85957 0.91549 0.90305 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.36 12.78 55.43 0.71 -23.66 16 2 C 0.08 2.31 5.39 -17.82 -0.10 2.21 16 3 Si 0.88 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.54 -14.40 8.75 -34.44 -0.30 -14.70 16 8 H 0.05 1.43 7.75 -52.49 -0.41 1.02 16 9 C 0.22 5.39 2.31 -68.78 -0.16 5.23 16 10 H 0.04 1.09 8.05 -51.93 -0.42 0.67 16 11 C -0.11 -2.29 5.08 -27.92 -0.14 -2.43 16 12 C -0.07 -1.36 5.78 -104.55 -0.60 -1.96 16 13 C -0.11 -1.79 9.65 -39.51 -0.38 -2.17 16 14 C -0.15 -2.30 9.99 -39.50 -0.39 -2.70 16 15 C 0.08 1.28 6.70 -39.29 -0.26 1.02 16 16 O -0.50 -6.62 13.51 -19.41 -0.26 -6.88 16 17 C -0.14 -2.34 9.59 -39.33 -0.38 -2.72 16 18 C -0.09 -1.71 5.79 -104.63 -0.61 -2.32 16 19 C 0.09 1.82 6.34 -5.16 -0.03 1.79 16 20 N -0.64 -14.74 5.89 -109.33 -0.64 -15.39 16 21 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 22 H 0.07 1.37 8.11 -51.93 -0.42 0.95 16 23 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 24 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 25 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.38 3.06 9.06 45.56 0.41 3.47 16 27 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 29 H 0.08 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.32 7.05 8.74 -39.29 -0.34 6.71 16 LS Contribution 256.99 15.07 3.87 3.87 Total: -1.00 -29.87 256.99 -7.55 -37.42 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -2.85 Total: 7.45 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -3.36 Total: -18.76 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.06 Total: -39.04 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.26 Total: -6.88 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.87 -7.55 -37.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828797.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.346 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds