Wall clock time and date at job start Mon Mar 30 2020 02:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99875 * 2 1 4 4 H 1.48501 * 109.47234 * 239.99664 * 3 2 1 5 5 H 1.48501 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47179 * 119.99647 * 3 2 1 7 7 C 1.37885 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99755 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99726 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.62943 * 299.59601 * 9 7 2 11 11 C 1.52898 * 109.62811 * 179.00956 * 9 7 2 12 12 C 1.50738 * 109.96248 * 189.87777 * 11 9 7 13 13 C 1.38726 * 118.43138 * 196.78030 * 12 11 9 14 14 C 1.37928 * 120.43195 * 180.02562 * 13 12 11 15 15 C 1.38766 * 119.76873 * 0.50225 * 14 13 12 16 16 O 1.35896 * 120.12814 * 179.66229 * 15 14 13 17 17 C 1.38501 * 119.74513 * 359.38946 * 15 14 13 18 18 C 1.37883 * 121.63467 * 16.90764 * 12 11 9 19 19 C 1.50623 * 121.85109 * 359.55372 * 18 12 11 20 20 N 1.46633 * 110.50068 * 17.53635 * 19 18 12 21 21 H 0.96991 * 120.00306 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.38409 * 310.02473 * 11 9 7 23 23 H 1.08995 * 109.38996 * 69.82902 * 11 9 7 24 24 H 1.07997 * 119.78204 * 0.27574 * 13 12 11 25 25 H 1.08001 * 120.11664 * 180.23533 * 14 13 12 26 26 H 0.96700 * 114.00170 * 269.72742 * 16 15 14 27 27 H 1.08000 * 119.83307 * 180.31951 * 17 15 14 28 28 H 1.09003 * 109.27406 * 137.80190 * 19 18 12 29 29 H 1.09009 * 109.27297 * 257.30903 * 19 18 12 30 30 H 1.00897 * 110.99677 * 70.87147 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6285 -2.5625 0.8930 11 6 2.2412 -3.6640 -0.0237 12 6 1.5076 -4.9581 -0.2670 13 6 2.1564 -6.1496 0.0224 14 6 1.5240 -7.3577 -0.1849 15 6 0.2341 -7.3814 -0.6961 16 8 -0.3933 -8.5678 -0.9097 17 6 -0.4135 -6.1911 -0.9825 18 6 0.2228 -4.9781 -0.7673 19 6 -0.5244 -3.7107 -1.0898 20 7 0.4040 -2.5811 -1.2001 21 1 -0.4850 0.8399 -0.0004 22 1 2.9678 -3.5046 -0.8204 23 1 2.7597 -3.7181 0.9335 24 1 3.1617 -6.1310 0.4165 25 1 2.0325 -8.2822 0.0458 26 1 -0.2525 -8.9336 -1.7937 27 1 -1.4193 -6.2077 -1.3756 28 1 -1.0532 -3.8353 -2.0348 29 1 -1.2456 -3.5069 -0.2982 30 1 0.9661 -2.6552 -2.0347 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260828797.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:58 Heat of formation + Delta-G solvation = -42.613929 kcal Electronic energy + Delta-G solvation = -14426.763676 eV Core-core repulsion = 11992.592505 eV Total energy + Delta-G solvation = -2434.171171 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.12300 -38.86027 -36.53929 -34.37006 -33.20477 -31.01888 -29.85539 -26.73010 -25.09845 -23.20904 -23.18114 -20.96562 -18.91721 -18.66358 -16.88017 -16.64226 -16.27128 -16.22583 -15.41302 -15.30909 -14.69019 -14.41091 -14.22941 -13.84107 -13.51766 -12.98145 -12.79593 -12.56889 -12.31458 -12.28531 -12.11156 -11.62217 -11.45315 -10.95279 -10.49874 -9.72730 -9.28874 -8.71760 -7.94850 -6.16587 0.30237 0.38107 1.47407 1.48266 1.55454 2.49679 2.65769 3.25776 3.30537 3.87203 3.95542 4.03951 4.13579 4.31753 4.47020 4.54872 4.70396 4.81358 4.83724 5.01194 5.07676 5.18522 5.39145 5.44051 5.48257 5.78388 5.81906 5.93459 6.22768 6.61296 6.88386 7.02532 7.12905 7.56223 9.08866 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.066537 B = 0.006998 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.715554 B = 4000.381616 C = 4339.532627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.034 3.966 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.222 3.778 10 H -0.002 1.002 11 C -0.099 4.099 12 C -0.099 4.099 13 C -0.108 4.108 14 C -0.149 4.149 15 C 0.095 3.905 16 O -0.506 6.506 17 C -0.149 4.149 18 C -0.109 4.109 19 C 0.098 3.902 20 N -0.658 5.658 21 H 0.255 0.745 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.141 0.859 25 H 0.150 0.850 26 H 0.409 0.591 27 H 0.137 0.863 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.132 -13.318 -3.501 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.169 4.169 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.591 4.591 8 H 0.074 0.926 9 C 0.114 3.886 10 H 0.016 0.984 11 C -0.138 4.138 12 C -0.099 4.099 13 C -0.126 4.126 14 C -0.167 4.167 15 C 0.050 3.950 16 O -0.319 6.319 17 C -0.168 4.168 18 C -0.111 4.111 19 C -0.032 4.032 20 N -0.285 5.285 21 H 0.064 0.936 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.159 0.841 25 H 0.168 0.832 26 H 0.267 0.733 27 H 0.155 0.845 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.295 -12.638 -2.708 12.990 hybrid contribution 0.907 0.213 -0.458 1.038 sum 2.203 -12.425 -3.166 13.010 Atomic orbital electron populations 1.70216 1.07236 1.26451 1.48036 1.25708 0.95388 1.01976 0.93866 0.85774 0.78417 0.79519 0.78685 1.19677 1.21373 1.19808 1.21300 0.92529 0.91496 1.53746 0.92638 1.18920 0.89067 0.91708 0.88857 0.98396 1.21156 0.98774 0.92525 1.01347 1.20047 0.94599 0.96017 0.99265 1.21215 1.00581 0.91010 0.99782 1.21534 0.94317 0.98929 1.01926 1.18414 0.91328 0.85153 1.00091 1.84762 1.73465 1.34083 1.39564 1.21480 1.01084 0.91252 1.02987 1.20758 0.94844 0.96790 0.98691 1.20938 0.95561 0.85727 1.01022 1.61116 1.22773 1.39656 1.04934 0.93626 0.91249 0.91442 0.84138 0.83225 0.73268 0.84542 0.89515 0.92535 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.11 12.78 21.45 0.27 -51.83 16 2 C 0.03 1.90 5.39 84.66 0.46 2.36 16 3 Si 0.95 43.53 29.54 68.60 2.03 45.55 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.55 -30.26 8.75 25.60 0.22 -30.04 16 8 H 0.06 2.94 7.75 -2.91 -0.02 2.92 16 9 C 0.22 11.22 2.31 44.08 0.10 11.32 16 10 H 0.00 -0.11 8.05 -2.39 -0.02 -0.13 16 11 C -0.10 -4.07 5.08 29.83 0.15 -3.92 16 12 C -0.10 -3.62 5.78 -19.82 -0.11 -3.73 16 13 C -0.11 -3.22 9.65 22.31 0.22 -3.00 16 14 C -0.15 -3.91 9.99 22.32 0.22 -3.68 16 15 C 0.09 2.58 6.70 22.46 0.15 2.73 16 16 O -0.51 -11.27 13.51 -92.38 -1.25 -12.52 16 17 C -0.15 -4.56 9.59 22.43 0.22 -4.35 16 18 C -0.11 -3.94 5.79 -19.87 -0.12 -4.05 16 19 C 0.10 3.94 6.34 85.58 0.54 4.48 16 20 N -0.66 -31.27 5.89 -499.81 -2.94 -34.21 16 21 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 22 H 0.07 2.78 8.11 -2.39 -0.02 2.76 16 23 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 24 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 25 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 26 H 0.41 4.74 9.06 -74.06 -0.67 4.07 16 27 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.09 3.04 8.13 -2.39 -0.02 3.02 16 29 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 30 H 0.32 14.57 8.74 -89.70 -0.78 13.79 16 Total: -1.00 -64.56 256.99 -0.13 -64.69 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.29 Total: 20.20 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 2.05 Total: -31.89 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -2.67 Total: -86.04 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -1.25 Total: -12.52 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -64.56 -0.13 -64.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828797.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.080 kcal (2) G-P(sol) polarization free energy of solvation -64.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds