Wall clock time and date at job start Mon Mar 30 2020 03:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00101 * 2 1 4 4 H 1.48495 * 109.47071 * 240.00492 * 3 2 1 5 5 H 1.48502 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47324 * 120.00044 * 3 2 1 7 7 C 1.37874 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99808 * 186.87787 * 7 2 1 9 9 C 1.50694 * 120.00321 * 6.88012 * 7 2 1 10 10 O 1.42898 * 109.30091 * 304.48747 * 9 7 2 11 11 C 1.52798 * 109.30678 * 63.88244 * 9 7 2 12 12 C 1.53320 * 108.50661 * 171.40399 * 11 9 7 13 13 C 1.52817 * 108.47216 * 290.18802 * 12 11 9 14 14 C 1.50332 * 110.46399 * 50.82207 * 13 12 11 15 15 C 1.39077 * 118.70652 * 162.52059 * 14 13 12 16 16 C 1.38054 * 119.33286 * 179.81631 * 15 14 13 17 17 N 1.31889 * 120.58542 * 359.93544 * 16 15 14 18 18 C 1.31666 * 121.64971 * 0.12902 * 17 16 15 19 19 C 1.37851 * 122.80827 * 342.47783 * 14 13 12 20 20 H 0.96996 * 119.99709 * 359.97438 * 1 2 3 21 21 H 0.96699 * 114.00324 * 300.41099 * 10 9 7 22 22 H 1.09000 * 109.63229 * 291.10948 * 11 9 7 23 23 H 1.08996 * 109.63175 * 51.69459 * 11 9 7 24 24 H 1.09003 * 109.63586 * 170.49017 * 12 11 9 25 25 H 1.08995 * 109.63307 * 49.88624 * 12 11 9 26 26 H 1.09001 * 109.30590 * 290.51593 * 13 12 11 27 27 H 1.08998 * 109.30540 * 171.12902 * 13 12 11 28 28 H 1.08004 * 120.32799 * 359.84050 * 15 14 13 29 29 H 1.07990 * 119.70792 * 179.97438 * 16 15 14 30 30 H 1.08003 * 119.49434 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0787 -1.1975 0.1115 9 6 1.2592 -2.4943 -0.1574 10 8 0.2513 -2.5857 0.8514 11 6 0.5959 -2.5336 -1.5334 12 6 0.0281 -3.9396 -1.7600 13 6 1.1951 -4.9100 -1.9389 14 6 2.1862 -4.7519 -0.8197 15 6 3.1087 -5.7684 -0.5958 16 6 4.0273 -5.6351 0.4261 17 7 4.0354 -4.5562 1.1846 18 6 3.1757 -3.5760 1.0009 19 6 2.2214 -3.6409 -0.0044 20 1 -0.4849 0.8400 0.0004 21 1 0.5948 -2.5532 1.7547 22 1 -0.2114 -1.8021 -1.5718 23 1 1.3346 -2.3085 -2.3026 24 1 -0.5926 -3.9440 -2.6561 25 1 -0.5672 -4.2377 -0.8971 26 1 1.6893 -4.7080 -2.8892 27 1 0.8164 -5.9320 -1.9433 28 1 3.1066 -6.6530 -1.2155 29 1 4.7460 -6.4208 0.6055 30 1 3.2133 -2.7083 1.6430 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260911516.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:44 Heat of formation + Delta-G solvation = -44.780649 kcal Electronic energy + Delta-G solvation = -15097.146048 eV Core-core repulsion = 12662.880920 eV Total energy + Delta-G solvation = -2434.265127 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.49341 -38.42398 -35.98993 -34.22698 -32.58589 -31.85114 -29.70316 -27.03355 -24.64735 -23.99026 -22.77374 -20.31173 -18.95145 -17.67171 -17.02847 -16.94878 -16.59087 -15.41693 -15.28332 -14.89446 -14.81723 -14.09538 -14.03427 -13.40300 -13.30474 -13.03074 -12.86153 -12.77939 -12.41403 -12.09058 -11.79070 -11.54200 -11.17747 -10.60159 -10.18027 -10.15107 -9.99529 -9.73069 -8.05485 -6.30426 0.34807 0.48217 1.40376 1.41903 1.48740 2.40383 2.98178 3.17477 3.70739 3.83444 3.95739 4.14464 4.27936 4.31072 4.39576 4.48187 4.67862 4.90133 4.90369 5.01581 5.03424 5.08675 5.27910 5.45223 5.57616 5.65055 5.74819 5.91896 6.04350 6.20669 6.72637 7.17288 7.35333 7.56394 8.93074 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032273 B = 0.011733 C = 0.009676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.396012 B = 2385.952217 C = 2893.140136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.577 4.577 8 H 0.049 0.951 9 C 0.286 3.714 10 O -0.562 6.562 11 C -0.089 4.089 12 C -0.115 4.115 13 C -0.074 4.074 14 C -0.050 4.050 15 C -0.173 4.173 16 C 0.072 3.928 17 N -0.517 5.517 18 C 0.096 3.904 19 C -0.145 4.145 20 H 0.259 0.741 21 H 0.352 0.648 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.168 0.832 29 H 0.184 0.816 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 -9.835 -3.417 10.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.615 4.615 8 H 0.067 0.933 9 C 0.247 3.753 10 O -0.365 6.365 11 C -0.127 4.127 12 C -0.152 4.152 13 C -0.111 4.111 14 C -0.058 4.058 15 C -0.193 4.193 16 C -0.083 4.083 17 N -0.227 5.227 18 C -0.061 4.061 19 C -0.147 4.147 20 H 0.068 0.932 21 H 0.196 0.804 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.120 0.880 28 H 0.186 0.814 29 H 0.201 0.799 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.413 -9.702 -3.287 10.797 hybrid contribution 0.154 1.418 0.061 1.428 sum 3.567 -8.284 -3.226 9.579 Atomic orbital electron populations 1.70227 1.06827 1.26795 1.47329 1.25613 0.95348 1.01596 0.93622 0.85894 0.78688 0.79928 0.78757 1.19986 1.20891 1.19776 1.21839 0.93415 0.92296 1.53911 0.93270 1.17458 0.83274 0.87777 0.86817 1.86506 1.37136 1.96339 1.16530 1.21294 0.99465 0.96508 0.95419 1.21561 0.97458 0.94920 1.01310 1.20510 0.93924 1.00929 0.95688 1.20370 0.96462 0.92732 0.96263 1.22418 0.96203 1.00340 1.00299 1.23209 0.97991 0.95401 0.91737 1.67617 1.24150 1.02310 1.28608 1.22774 0.90780 0.96238 0.96332 1.21699 0.98903 0.97487 0.96621 0.93200 0.80421 0.92813 0.93517 0.90529 0.93198 0.89143 0.88017 0.81434 0.79898 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.44 11.20 21.45 0.24 -49.20 16 2 C 0.04 2.28 5.22 84.65 0.44 2.72 16 3 Si 0.94 42.82 29.54 68.60 2.03 44.85 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.58 -30.78 7.29 25.60 0.19 -30.59 16 8 H 0.05 2.65 6.89 -2.91 -0.02 2.63 16 9 C 0.29 13.94 0.52 -12.43 -0.01 13.94 16 10 O -0.56 -28.77 11.37 -148.98 -1.69 -30.46 16 11 C -0.09 -4.11 4.63 30.63 0.14 -3.97 16 12 C -0.11 -4.17 5.96 30.64 0.18 -3.99 16 13 C -0.07 -2.20 5.72 29.67 0.17 -2.03 16 14 C -0.05 -1.77 5.74 -19.87 -0.11 -1.88 16 15 C -0.17 -4.91 9.74 22.43 0.22 -4.69 16 16 C 0.07 2.17 11.19 84.64 0.95 3.11 16 17 N -0.52 -19.64 10.36 -195.65 -2.03 -21.67 16 18 C 0.10 4.04 9.86 84.84 0.84 4.88 16 19 C -0.14 -6.19 4.99 -19.90 -0.10 -6.29 16 20 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 21 H 0.35 16.79 8.98 -74.06 -0.66 16.12 16 22 H 0.05 2.82 6.89 -2.39 -0.02 2.81 16 23 H 0.05 2.14 8.08 -2.39 -0.02 2.12 16 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.05 1.97 7.66 -2.39 -0.02 1.95 16 26 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.17 3.23 8.06 -2.91 -0.02 3.20 16 29 H 0.18 3.91 8.06 -2.92 -0.02 3.88 16 30 H 0.14 6.24 7.13 -2.91 -0.02 6.22 16 Total: -1.00 -62.97 249.13 1.94 -61.03 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.49 Total: 24.24 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 2.90 Total: -28.79 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -1.79 Total: -70.87 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -1.69 Total: -30.46 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -62.97 1.94 -61.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911516.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.251 kcal (2) G-P(sol) polarization free energy of solvation -62.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds