Wall clock time and date at job start Mon Mar 30 2020 03:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.88056 * 2 1 4 4 C 1.54332 * 110.82160 * 123.51191 * 2 1 3 5 5 C 1.51485 * 105.21400 * 144.56668 * 4 2 1 6 6 N 1.32291 * 130.14441 * 162.83097 * 5 4 2 7 7 C 1.31691 * 122.03094 * 179.97438 * 6 5 4 8 8 C 1.38221 * 120.80289 * 359.97087 * 7 6 5 9 9 C 1.38581 * 118.98579 * 0.02562 * 8 7 6 10 10 C 1.38164 * 109.58702 * 342.80647 * 5 4 2 11 11 C 1.51222 * 109.95718 * 0.02562 * 10 5 4 12 12 O 1.42901 * 110.31531 * 136.06479 * 11 10 5 13 13 C 1.50698 * 110.31491 * 258.24400 * 11 10 5 14 14 H 1.08000 * 119.99691 * 31.17747 * 13 11 10 15 15 C 1.37882 * 120.00256 * 211.17937 * 13 11 10 16 16 N 1.31518 * 120.00140 * 176.61744 * 15 13 11 17 17 Si 1.86800 * 119.99743 * 356.61942 * 15 13 11 18 18 H 1.48497 * 109.47324 * 87.95112 * 17 15 13 19 19 H 1.48509 * 109.46760 * 207.95472 * 17 15 13 20 20 H 1.48504 * 109.47164 * 327.94935 * 17 15 13 21 21 H 1.09000 * 109.46870 * 188.70098 * 1 2 3 22 22 H 1.08999 * 109.47535 * 308.70001 * 1 2 3 23 23 H 1.08999 * 109.47325 * 68.70697 * 1 2 3 24 24 H 1.09002 * 110.29779 * 263.50100 * 4 2 1 25 25 H 1.08997 * 110.30002 * 25.63324 * 4 2 1 26 26 H 1.08000 * 119.59761 * 179.97438 * 7 6 5 27 27 H 1.08000 * 120.50850 * 180.02562 * 8 7 6 28 28 H 1.08009 * 120.71694 * 179.97438 * 9 8 7 29 29 H 0.96704 * 114.00385 * 66.16528 * 12 11 10 30 30 H 0.96998 * 120.00052 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0786 -0.7964 1.2027 5 6 3.3332 -1.4744 0.6917 6 7 4.3396 -2.0185 1.3559 7 6 5.3639 -2.5726 0.7411 8 6 5.4265 -2.6075 -0.6393 9 6 4.3922 -2.0484 -1.3728 10 6 3.3302 -1.4732 -0.6900 11 6 2.0789 -0.7966 -1.2029 12 8 2.3986 0.0874 -2.2792 13 6 1.0736 -1.8260 -1.6509 14 1 1.0335 -2.7892 -1.1640 15 6 0.2050 -1.5381 -2.6823 16 7 -0.6271 -2.4589 -3.1176 17 14 0.2101 0.1597 -3.4613 18 1 1.2056 0.1961 -4.5625 19 1 -1.1395 0.4594 -4.0038 20 1 0.5679 1.1734 -2.4367 21 1 -0.3633 -1.0159 0.1555 22 1 -0.3634 0.6425 0.8020 23 1 -0.3634 0.3732 -0.9575 24 1 2.3212 -0.1219 2.0239 25 1 1.3515 -1.5412 1.5264 26 1 6.1647 -3.0051 1.3225 27 1 6.2686 -3.0635 -1.1386 28 1 4.4126 -2.0598 -2.4526 29 1 2.7215 -0.3603 -3.0733 30 1 -1.2379 -2.2565 -3.8434 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260928898.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:52 Heat of formation + Delta-G solvation = -11.012926 kcal Electronic energy + Delta-G solvation = -15221.420069 eV Core-core repulsion = 12788.619220 eV Total energy + Delta-G solvation = -2432.800849 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28873 -37.34660 -34.38239 -32.35756 -31.81214 -30.30132 -27.32849 -25.91994 -24.09704 -21.81443 -21.21440 -19.13811 -17.43398 -16.21370 -15.87873 -15.37348 -15.34067 -14.26123 -13.70400 -13.35465 -13.18399 -12.63479 -12.33912 -12.09652 -11.93326 -11.66161 -11.41670 -10.95112 -10.72052 -10.37289 -10.13905 -9.96767 -9.39018 -9.07834 -8.96181 -8.67246 -8.31418 -8.06202 -6.21944 -4.31769 1.64779 1.85224 3.35568 3.50091 3.70715 4.31315 4.42536 4.50670 5.02917 5.10997 5.21168 5.33660 5.51353 5.69391 5.73052 5.87466 5.97231 6.23307 6.28856 6.44921 6.49103 6.58596 6.65861 6.73989 6.99933 7.09571 7.24398 7.27166 7.46715 8.04638 8.48790 8.55806 8.77336 9.36709 10.87080 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.036542 B = 0.012359 C = 0.011072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.049062 B = 2265.054241 C = 2528.401790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 H 0.068 0.932 4 C -0.055 4.055 5 C 0.113 3.887 6 N -0.488 5.488 7 C 0.082 3.918 8 C -0.182 4.182 9 C -0.063 4.063 10 C -0.127 4.127 11 C 0.262 3.738 12 O -0.555 6.555 13 C -0.543 4.543 14 H 0.079 0.921 15 C 0.072 3.928 16 N -0.887 5.887 17 Si 0.943 3.057 18 H -0.300 1.300 19 H -0.326 1.326 20 H -0.258 1.258 21 H 0.071 0.929 22 H 0.032 0.968 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.148 0.852 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.367 0.633 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.500 2.774 3.886 8.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.093 4.093 3 H 0.086 0.914 4 C -0.093 4.093 5 C -0.024 4.024 6 N -0.197 5.197 7 C -0.075 4.075 8 C -0.202 4.202 9 C -0.088 4.088 10 C -0.129 4.129 11 C 0.222 3.778 12 O -0.363 6.363 13 C -0.580 4.580 14 H 0.097 0.903 15 C -0.132 4.132 16 N -0.522 5.522 17 Si 0.779 3.221 18 H -0.229 1.229 19 H -0.258 1.258 20 H -0.184 1.184 21 H 0.090 0.910 22 H 0.051 0.949 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.165 0.835 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.216 0.784 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.150 3.142 5.128 9.343 hybrid contribution 0.346 0.049 -1.908 1.940 sum 7.496 3.191 3.219 8.760 Atomic orbital electron populations 1.21711 0.93544 1.02204 1.00362 1.21867 0.96880 0.97653 0.92929 0.91391 1.21021 0.91895 0.98311 0.98049 1.21838 0.93909 0.95191 0.91437 1.66787 1.01254 1.09561 1.42112 1.22393 0.95740 0.97403 0.92011 1.21933 0.99967 1.02650 0.95674 1.20989 0.92494 0.95008 1.00351 1.22462 0.96741 0.97569 0.96134 1.18910 0.87719 0.86762 0.84419 1.86350 1.84948 1.39081 1.25937 1.20998 1.16703 1.00822 1.19456 0.90260 1.25138 0.94098 0.98140 0.95857 1.69941 1.21565 1.33958 1.26701 0.85867 0.73554 0.84414 0.78222 1.22865 1.25830 1.18439 0.90981 0.94852 0.92391 0.90912 0.89190 0.83482 0.85428 0.85592 0.78428 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.02 37.16 0.30 -2.17 16 2 C -0.07 -1.52 3.13 -89.21 -0.28 -1.80 16 3 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 4 C -0.05 -1.03 6.31 -26.80 -0.17 -1.20 16 5 C 0.11 2.31 7.32 -82.04 -0.60 1.71 16 6 N -0.49 -9.42 10.35 -9.19 -0.10 -9.51 16 7 C 0.08 1.34 11.18 -17.62 -0.20 1.15 16 8 C -0.18 -2.89 10.12 -39.46 -0.40 -3.29 16 9 C -0.06 -1.16 10.16 -39.27 -0.40 -1.55 16 10 C -0.13 -2.66 5.13 -104.21 -0.53 -3.20 16 11 C 0.26 5.90 0.76 -91.96 -0.07 5.83 16 12 O -0.56 -12.26 8.33 -35.23 -0.29 -12.56 16 13 C -0.54 -14.14 7.04 -34.44 -0.24 -14.38 16 14 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 15 C 0.07 1.94 5.06 -17.82 -0.09 1.85 16 16 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 17 Si 0.94 22.69 22.26 -169.99 -3.78 18.91 16 18 H -0.30 -7.01 7.01 56.52 0.40 -6.62 16 19 H -0.33 -8.13 7.11 56.52 0.40 -7.73 16 20 H -0.26 -6.13 5.60 56.52 0.32 -5.82 16 21 H 0.07 1.56 7.08 -51.93 -0.37 1.19 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 1.28 4.20 -51.93 -0.22 1.06 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 25 H 0.09 1.68 7.75 -51.93 -0.40 1.27 16 26 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 28 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 29 H 0.37 7.41 7.80 45.56 0.36 7.76 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 240.62 15.07 3.63 3.63 Total: -1.00 -30.12 240.62 -5.27 -35.39 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -2.82 Total: 6.11 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.68 Total: -17.05 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.68 Total: -34.42 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.29 Total: -12.56 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -3.78 Total: 18.91 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.12 -5.27 -35.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928898.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.374 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds