Wall clock time and date at job start Mon Mar 30 2020 03:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.88056 * 2 1 4 4 C 1.54332 * 110.82160 * 123.51191 * 2 1 3 5 5 C 1.51485 * 105.21400 * 144.56668 * 4 2 1 6 6 N 1.32291 * 130.14441 * 162.83097 * 5 4 2 7 7 C 1.31691 * 122.03094 * 179.97438 * 6 5 4 8 8 C 1.38221 * 120.80289 * 359.97087 * 7 6 5 9 9 C 1.38581 * 118.98579 * 0.02562 * 8 7 6 10 10 C 1.38164 * 109.58702 * 342.80647 * 5 4 2 11 11 C 1.51222 * 109.95718 * 0.02562 * 10 5 4 12 12 O 1.42901 * 110.31531 * 136.06479 * 11 10 5 13 13 C 1.50698 * 110.31491 * 258.24400 * 11 10 5 14 14 H 1.08000 * 119.99691 * 31.17747 * 13 11 10 15 15 C 1.37882 * 120.00256 * 211.17937 * 13 11 10 16 16 N 1.31518 * 120.00140 * 176.61744 * 15 13 11 17 17 Si 1.86800 * 119.99743 * 356.61942 * 15 13 11 18 18 H 1.48497 * 109.47324 * 87.95112 * 17 15 13 19 19 H 1.48509 * 109.46760 * 207.95472 * 17 15 13 20 20 H 1.48504 * 109.47164 * 327.94935 * 17 15 13 21 21 H 1.09000 * 109.46870 * 188.70098 * 1 2 3 22 22 H 1.08999 * 109.47535 * 308.70001 * 1 2 3 23 23 H 1.08999 * 109.47325 * 68.70697 * 1 2 3 24 24 H 1.09002 * 110.29779 * 263.50100 * 4 2 1 25 25 H 1.08997 * 110.30002 * 25.63324 * 4 2 1 26 26 H 1.08000 * 119.59761 * 179.97438 * 7 6 5 27 27 H 1.08000 * 120.50850 * 180.02562 * 8 7 6 28 28 H 1.08009 * 120.71694 * 179.97438 * 9 8 7 29 29 H 0.96704 * 114.00385 * 66.16528 * 12 11 10 30 30 H 0.96998 * 120.00052 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0786 -0.7964 1.2027 5 6 3.3332 -1.4744 0.6917 6 7 4.3396 -2.0185 1.3559 7 6 5.3639 -2.5726 0.7411 8 6 5.4265 -2.6075 -0.6393 9 6 4.3922 -2.0484 -1.3728 10 6 3.3302 -1.4732 -0.6900 11 6 2.0789 -0.7966 -1.2029 12 8 2.3986 0.0874 -2.2792 13 6 1.0736 -1.8260 -1.6509 14 1 1.0335 -2.7892 -1.1640 15 6 0.2050 -1.5381 -2.6823 16 7 -0.6271 -2.4589 -3.1176 17 14 0.2101 0.1597 -3.4613 18 1 1.2056 0.1961 -4.5625 19 1 -1.1395 0.4594 -4.0038 20 1 0.5679 1.1734 -2.4367 21 1 -0.3633 -1.0159 0.1555 22 1 -0.3634 0.6425 0.8020 23 1 -0.3634 0.3732 -0.9575 24 1 2.3212 -0.1219 2.0239 25 1 1.3515 -1.5412 1.5264 26 1 6.1647 -3.0051 1.3225 27 1 6.2686 -3.0635 -1.1386 28 1 4.4126 -2.0598 -2.4526 29 1 2.7215 -0.3603 -3.0733 30 1 -1.2379 -2.2565 -3.8434 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260928898.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:52 Heat of formation + Delta-G solvation = -33.064774 kcal Electronic energy + Delta-G solvation = -15222.376309 eV Core-core repulsion = 12788.619220 eV Total energy + Delta-G solvation = -2433.757089 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.77366 -38.94517 -36.00050 -34.41507 -33.23430 -31.80972 -29.11358 -27.45684 -25.87090 -23.29256 -22.66669 -20.86889 -19.29819 -17.76484 -17.37076 -17.23973 -16.88175 -15.85886 -15.26721 -15.00142 -14.71625 -14.31448 -14.02465 -13.75144 -13.58443 -13.17264 -13.09681 -12.64338 -12.43602 -12.12953 -11.85016 -11.69437 -11.21046 -10.71736 -10.54075 -10.53062 -9.97897 -9.54917 -8.33209 -6.44148 0.26361 0.43371 1.42213 1.53773 1.77554 2.41875 2.90345 3.00139 3.12469 3.49094 3.72164 4.03696 4.17112 4.20361 4.30522 4.38289 4.55989 4.75333 4.86640 4.91350 4.93946 5.02745 5.19425 5.26760 5.36916 5.43396 5.53992 5.72991 5.87904 6.02032 6.57483 6.80643 7.09874 7.28549 8.80158 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.036542 B = 0.012359 C = 0.011072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.049062 B = 2265.054241 C = 2528.401790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.075 4.075 3 H 0.079 0.921 4 C -0.050 4.050 5 C 0.094 3.906 6 N -0.505 5.505 7 C 0.084 3.916 8 C -0.170 4.170 9 C -0.077 4.077 10 C -0.162 4.162 11 C 0.259 3.741 12 O -0.557 6.557 13 C -0.528 4.528 14 H 0.034 0.966 15 C 0.030 3.970 16 N -0.936 5.936 17 Si 0.999 3.001 18 H -0.286 1.286 19 H -0.340 1.340 20 H -0.251 1.251 21 H 0.048 0.952 22 H 0.069 0.931 23 H 0.038 0.962 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.190 0.810 27 H 0.171 0.829 28 H 0.137 0.863 29 H 0.374 0.626 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.774 3.619 4.520 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.095 4.095 3 H 0.097 0.903 4 C -0.088 4.088 5 C -0.042 4.042 6 N -0.215 5.215 7 C -0.074 4.074 8 C -0.189 4.189 9 C -0.102 4.102 10 C -0.164 4.164 11 C 0.219 3.781 12 O -0.365 6.365 13 C -0.565 4.565 14 H 0.052 0.948 15 C -0.169 4.169 16 N -0.574 5.574 17 Si 0.834 3.166 18 H -0.214 1.214 19 H -0.273 1.273 20 H -0.177 1.177 21 H 0.067 0.933 22 H 0.088 0.912 23 H 0.057 0.943 24 H 0.117 0.883 25 H 0.101 0.899 26 H 0.207 0.793 27 H 0.189 0.811 28 H 0.155 0.845 29 H 0.223 0.777 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.446 3.992 5.772 11.768 hybrid contribution -0.242 -0.331 -2.044 2.085 sum 9.204 3.661 3.728 10.584 Atomic orbital electron populations 1.21657 0.93774 1.01475 1.00666 1.21886 0.96710 0.98142 0.92726 0.90296 1.20971 0.91431 0.98392 0.98008 1.21986 0.94754 0.96091 0.91372 1.66858 1.01789 1.10244 1.42574 1.23204 0.95560 0.95684 0.92934 1.22386 1.00046 1.00924 0.95559 1.21350 0.92677 0.94879 1.01334 1.22407 0.97359 0.99757 0.96871 1.18834 0.87867 0.86434 0.84947 1.86306 1.84832 1.39100 1.26308 1.21036 1.17283 0.99857 1.18344 0.94763 1.25781 0.93751 1.00893 0.96507 1.70061 1.23236 1.35991 1.28066 0.84931 0.73006 0.80886 0.77798 1.21381 1.27332 1.17680 0.93309 0.91218 0.94270 0.88331 0.89878 0.79304 0.81118 0.84499 0.77677 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 8.02 71.98 0.58 -4.20 16 2 C -0.08 -3.02 3.13 -9.88 -0.03 -3.05 16 3 H 0.08 2.99 8.11 -2.39 -0.02 2.97 16 4 C -0.05 -1.84 6.31 30.55 0.19 -1.65 16 5 C 0.09 3.72 7.32 42.72 0.31 4.04 16 6 N -0.51 -18.30 10.35 -182.98 -1.89 -20.20 16 7 C 0.08 2.42 11.18 84.71 0.95 3.37 16 8 C -0.17 -4.73 10.12 22.35 0.23 -4.51 16 9 C -0.08 -2.67 10.16 22.47 0.23 -2.45 16 10 C -0.16 -6.65 5.13 -19.60 -0.10 -6.75 16 11 C 0.26 11.58 0.76 -11.66 -0.01 11.57 16 12 O -0.56 -23.84 8.33 -148.98 -1.24 -25.08 16 13 C -0.53 -28.20 7.04 25.60 0.18 -28.02 16 14 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 15 C 0.03 1.65 5.06 84.66 0.43 2.08 16 16 N -0.94 -56.05 13.96 21.45 0.30 -55.75 16 17 Si 1.00 47.06 22.26 68.60 1.53 48.59 16 18 H -0.29 -12.68 7.01 99.48 0.70 -11.99 16 19 H -0.34 -16.70 7.11 99.48 0.71 -15.99 16 20 H -0.25 -11.43 5.60 99.48 0.56 -10.88 16 21 H 0.05 2.15 7.08 -2.39 -0.02 2.13 16 22 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.04 1.70 4.20 -2.39 -0.01 1.69 16 24 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 25 H 0.08 3.10 7.75 -2.39 -0.02 3.08 16 26 H 0.19 3.77 8.06 -2.91 -0.02 3.75 16 27 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 28 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 29 H 0.37 14.59 7.80 -74.05 -0.58 14.01 16 30 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -66.06 240.62 2.06 -64.00 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.42 Total: 17.99 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 2.95 Total: -29.55 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -1.59 Total: -75.94 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -1.24 Total: -25.08 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.53 Total: 48.59 kcal Total: -66.06 2.06 -64.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928898.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.934 kcal (2) G-P(sol) polarization free energy of solvation -66.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds