Wall clock time and date at job start Mon Mar 30 2020 03:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 110.72599 * 2 1 4 4 C 1.54334 * 110.82239 * 236.37598 * 2 1 3 5 5 C 1.51478 * 105.20879 * 268.10987 * 4 2 1 6 6 N 1.32304 * 130.13465 * 162.78741 * 5 4 2 7 7 C 1.31686 * 122.02670 * 179.97438 * 6 5 4 8 8 C 1.38222 * 120.80454 * 0.02562 * 7 6 5 9 9 C 1.38575 * 118.98973 * 0.02562 * 8 7 6 10 10 C 1.38162 * 109.59208 * 342.78688 * 5 4 2 11 11 C 1.51218 * 109.95707 * 0.05445 * 10 5 4 12 12 O 1.42898 * 110.31147 * 136.03097 * 11 10 5 13 13 C 1.50708 * 110.31197 * 258.10631 * 11 10 5 14 14 H 1.07996 * 119.99546 * 25.09214 * 13 11 10 15 15 C 1.37879 * 119.99973 * 205.09348 * 13 11 10 16 16 N 1.31509 * 119.99976 * 173.56844 * 15 13 11 17 17 Si 1.86807 * 119.99836 * 353.57179 * 15 13 11 18 18 H 1.48494 * 109.46907 * 87.17318 * 17 15 13 19 19 H 1.48504 * 109.46594 * 207.17217 * 17 15 13 20 20 H 1.48500 * 109.47186 * 327.16985 * 17 15 13 21 21 H 1.08993 * 109.47241 * 296.59705 * 1 2 3 22 22 H 1.08996 * 109.46838 * 56.59855 * 1 2 3 23 23 H 1.09002 * 109.46611 * 176.59437 * 1 2 3 24 24 H 1.08994 * 110.29600 * 27.05162 * 4 2 1 25 25 H 1.09002 * 110.29132 * 149.08199 * 4 2 1 26 26 H 1.08000 * 119.59583 * 180.02562 * 7 6 5 27 27 H 1.08000 * 120.50393 * 179.97438 * 8 7 6 28 28 H 1.08007 * 120.72376 * 180.02562 * 9 8 7 29 29 H 0.96694 * 114.00364 * 56.26379 * 12 11 10 30 30 H 0.97002 * 120.00036 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0787 -0.7988 -1.2012 5 6 2.2650 -2.2115 -0.6872 6 7 2.4139 -3.3472 -1.3494 7 6 2.5667 -4.5005 -0.7323 8 6 2.5768 -4.5687 0.6482 9 6 2.4228 -3.4018 1.3795 10 6 2.2654 -2.2055 0.6944 11 6 2.0787 -0.7943 1.2045 12 8 1.1387 -0.7761 2.2806 13 6 3.3984 -0.2217 1.6540 14 1 4.3206 -0.5999 1.2385 15 6 3.4281 0.7849 2.5958 16 7 4.5786 1.1973 3.0814 17 14 1.8341 1.5628 3.1821 18 1 1.2867 0.7753 4.3158 19 1 2.0973 2.9548 3.6276 20 1 0.8514 1.5768 2.0689 21 1 -0.3633 0.4601 0.9188 22 1 -0.3633 0.5657 -0.8579 23 1 -0.3632 -1.0259 -0.0611 24 1 1.3621 -0.7865 -2.0224 25 1 3.0329 -0.3844 -1.5267 26 1 2.6855 -5.4039 -1.3120 27 1 2.7020 -5.5172 1.1492 28 1 2.4269 -3.4227 2.4593 29 1 1.3722 -1.3579 3.0167 30 1 4.5995 1.9057 3.7437 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260928906.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:02 Heat of formation + Delta-G solvation = -16.262261 kcal Electronic energy + Delta-G solvation = -15190.607262 eV Core-core repulsion = 12757.578785 eV Total energy + Delta-G solvation = -2433.028477 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.31997 -37.25684 -34.26303 -32.32960 -31.79702 -30.16748 -27.34996 -26.42487 -23.78528 -21.97396 -21.10555 -19.18040 -17.43887 -16.30617 -15.83589 -15.40934 -15.09592 -14.19806 -13.74357 -13.36256 -12.88183 -12.57886 -12.44879 -12.12654 -11.99221 -11.75984 -11.52139 -10.91364 -10.66573 -10.39202 -10.24125 -10.15596 -9.41891 -9.12597 -9.04010 -8.60350 -8.46260 -8.04434 -6.19688 -4.32343 1.64370 1.84262 3.45152 3.52322 3.69860 4.30974 4.48147 4.51899 5.04156 5.11405 5.22874 5.39127 5.48869 5.67707 5.72828 5.78803 5.95843 6.09113 6.27107 6.31990 6.38323 6.50983 6.58923 6.71914 6.92795 6.94519 7.18601 7.23530 7.46880 8.12059 8.48462 8.58988 8.81508 9.40588 10.89032 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.034949 B = 0.012363 C = 0.011096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.976264 B = 2264.242329 C = 2522.935770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 H 0.091 0.909 4 C -0.057 4.057 5 C 0.117 3.883 6 N -0.488 5.488 7 C 0.082 3.918 8 C -0.183 4.183 9 C -0.064 4.064 10 C -0.127 4.127 11 C 0.269 3.731 12 O -0.556 6.556 13 C -0.550 4.550 14 H 0.076 0.924 15 C 0.076 3.924 16 N -0.888 5.888 17 Si 0.942 3.058 18 H -0.293 1.293 19 H -0.326 1.326 20 H -0.259 1.259 21 H 0.066 0.934 22 H 0.041 0.959 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.148 0.852 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.366 0.634 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 -6.678 -3.942 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 H 0.110 0.890 4 C -0.095 4.095 5 C -0.020 4.020 6 N -0.197 5.197 7 C -0.075 4.075 8 C -0.203 4.203 9 C -0.090 4.090 10 C -0.129 4.129 11 C 0.229 3.771 12 O -0.363 6.363 13 C -0.587 4.587 14 H 0.094 0.906 15 C -0.129 4.129 16 N -0.523 5.523 17 Si 0.776 3.224 18 H -0.220 1.220 19 H -0.258 1.258 20 H -0.184 1.184 21 H 0.084 0.916 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.165 0.835 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.214 0.786 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.516 -6.136 -5.144 10.323 hybrid contribution -0.116 -0.240 1.739 1.759 sum -6.632 -6.376 -3.405 9.810 Atomic orbital electron populations 1.21710 0.95511 1.00766 1.01165 1.22151 0.94753 0.99772 0.92962 0.89031 1.21005 1.01939 0.88345 0.98178 1.21826 0.95014 0.93764 0.91442 1.66794 1.12766 0.98064 1.42119 1.22396 0.98027 0.95093 0.91994 1.21927 1.03880 0.98760 0.95683 1.20995 0.96241 0.91374 1.00371 1.22431 0.96598 0.97716 0.96142 1.18761 0.88356 0.85730 0.84286 1.86182 1.52017 1.67136 1.30981 1.21106 0.91132 1.21029 1.25476 0.90555 1.25081 0.97515 0.95517 0.94756 1.69966 1.25930 1.28248 1.28164 0.85790 0.82365 0.74899 0.79325 1.22036 1.25768 1.18412 0.91553 0.93993 0.93683 0.90754 0.89345 0.83496 0.85433 0.85520 0.78601 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.49 37.16 0.32 -2.14 16 2 C -0.08 -1.57 2.16 -89.20 -0.19 -1.76 16 3 H 0.09 1.96 7.68 -51.93 -0.40 1.56 16 4 C -0.06 -1.07 6.30 -26.80 -0.17 -1.24 16 5 C 0.12 2.36 7.32 -82.03 -0.60 1.76 16 6 N -0.49 -9.37 10.35 -9.19 -0.10 -9.46 16 7 C 0.08 1.34 11.18 -17.62 -0.20 1.14 16 8 C -0.18 -2.86 10.12 -39.46 -0.40 -3.26 16 9 C -0.06 -1.16 9.96 -39.27 -0.39 -1.55 16 10 C -0.13 -2.62 5.12 -104.21 -0.53 -3.16 16 11 C 0.27 5.98 0.58 -91.95 -0.05 5.93 16 12 O -0.56 -11.87 7.00 -35.23 -0.25 -12.12 16 13 C -0.55 -14.66 8.71 -34.44 -0.30 -14.96 16 14 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 15 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 16 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 17 Si 0.94 22.80 24.68 -169.99 -4.20 18.60 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.33 -8.18 7.11 56.52 0.40 -7.78 16 20 H -0.26 -6.01 4.79 56.52 0.27 -5.74 16 21 H 0.07 1.29 6.13 -51.93 -0.32 0.97 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 25 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 26 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 28 H 0.13 2.06 8.00 -52.48 -0.42 1.64 16 29 H 0.37 6.98 8.74 45.56 0.40 7.37 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 245.77 15.07 3.70 3.70 Total: -1.00 -30.74 245.77 -5.63 -36.37 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -2.95 Total: 5.61 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -2.62 Total: -17.23 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.68 Total: -34.94 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.25 Total: -12.12 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.20 Total: 18.60 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.74 -5.63 -36.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928906.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.107 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds