Wall clock time and date at job start Mon Mar 30 2020 03:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 110.72599 * 2 1 4 4 C 1.54334 * 110.82239 * 236.37598 * 2 1 3 5 5 C 1.51478 * 105.20879 * 268.10987 * 4 2 1 6 6 N 1.32304 * 130.13465 * 162.78741 * 5 4 2 7 7 C 1.31686 * 122.02670 * 179.97438 * 6 5 4 8 8 C 1.38222 * 120.80454 * 0.02562 * 7 6 5 9 9 C 1.38575 * 118.98973 * 0.02562 * 8 7 6 10 10 C 1.38162 * 109.59208 * 342.78688 * 5 4 2 11 11 C 1.51218 * 109.95707 * 0.05445 * 10 5 4 12 12 O 1.42898 * 110.31147 * 136.03097 * 11 10 5 13 13 C 1.50708 * 110.31197 * 258.10631 * 11 10 5 14 14 H 1.07996 * 119.99546 * 25.09214 * 13 11 10 15 15 C 1.37879 * 119.99973 * 205.09348 * 13 11 10 16 16 N 1.31509 * 119.99976 * 173.56844 * 15 13 11 17 17 Si 1.86807 * 119.99836 * 353.57179 * 15 13 11 18 18 H 1.48494 * 109.46907 * 87.17318 * 17 15 13 19 19 H 1.48504 * 109.46594 * 207.17217 * 17 15 13 20 20 H 1.48500 * 109.47186 * 327.16985 * 17 15 13 21 21 H 1.08993 * 109.47241 * 296.59705 * 1 2 3 22 22 H 1.08996 * 109.46838 * 56.59855 * 1 2 3 23 23 H 1.09002 * 109.46611 * 176.59437 * 1 2 3 24 24 H 1.08994 * 110.29600 * 27.05162 * 4 2 1 25 25 H 1.09002 * 110.29132 * 149.08199 * 4 2 1 26 26 H 1.08000 * 119.59583 * 180.02562 * 7 6 5 27 27 H 1.08000 * 120.50393 * 179.97438 * 8 7 6 28 28 H 1.08007 * 120.72376 * 180.02562 * 9 8 7 29 29 H 0.96694 * 114.00364 * 56.26379 * 12 11 10 30 30 H 0.97002 * 120.00036 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0787 -0.7988 -1.2012 5 6 2.2650 -2.2115 -0.6872 6 7 2.4139 -3.3472 -1.3494 7 6 2.5667 -4.5005 -0.7323 8 6 2.5768 -4.5687 0.6482 9 6 2.4228 -3.4018 1.3795 10 6 2.2654 -2.2055 0.6944 11 6 2.0787 -0.7943 1.2045 12 8 1.1387 -0.7761 2.2806 13 6 3.3984 -0.2217 1.6540 14 1 4.3206 -0.5999 1.2385 15 6 3.4281 0.7849 2.5958 16 7 4.5786 1.1973 3.0814 17 14 1.8341 1.5628 3.1821 18 1 1.2867 0.7753 4.3158 19 1 2.0973 2.9548 3.6276 20 1 0.8514 1.5768 2.0689 21 1 -0.3633 0.4601 0.9188 22 1 -0.3633 0.5657 -0.8579 23 1 -0.3632 -1.0259 -0.0611 24 1 1.3621 -0.7865 -2.0224 25 1 3.0329 -0.3844 -1.5267 26 1 2.6855 -5.4039 -1.3120 27 1 2.7020 -5.5172 1.1492 28 1 2.4269 -3.4227 2.4593 29 1 1.3722 -1.3579 3.0167 30 1 4.5995 1.9057 3.7437 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260928906.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:01 Heat of formation + Delta-G solvation = -38.306370 kcal Electronic energy + Delta-G solvation = -15191.563167 eV Core-core repulsion = 12757.578785 eV Total energy + Delta-G solvation = -2433.984381 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.78720 -38.82034 -35.84436 -34.44055 -33.20817 -31.58834 -29.21215 -27.85145 -25.51485 -23.43544 -22.58368 -20.81345 -19.36728 -17.85415 -17.29125 -17.03847 -16.85826 -15.77818 -15.15725 -15.09863 -14.36513 -14.30950 -13.89833 -13.81398 -13.58852 -13.33741 -13.05559 -12.65589 -12.50253 -11.96982 -11.92260 -11.73541 -11.35346 -10.74455 -10.64921 -10.48020 -10.03195 -9.53902 -8.34915 -6.49283 0.27152 0.43952 1.49916 1.54458 1.76293 2.45735 2.91310 2.98293 3.14205 3.55343 3.78259 4.04381 4.12926 4.21253 4.33270 4.36321 4.54317 4.69590 4.85081 4.87643 4.94023 5.05630 5.17781 5.26394 5.33551 5.46804 5.54187 5.67407 5.88270 6.05305 6.55728 6.92017 7.10715 7.28990 8.78112 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.034949 B = 0.012363 C = 0.011096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.976264 B = 2264.242329 C = 2522.935770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 H 0.074 0.926 4 C -0.054 4.054 5 C 0.098 3.902 6 N -0.506 5.506 7 C 0.083 3.917 8 C -0.170 4.170 9 C -0.077 4.077 10 C -0.159 4.159 11 C 0.270 3.730 12 O -0.555 6.555 13 C -0.543 4.543 14 H 0.029 0.971 15 C 0.027 3.973 16 N -0.939 5.939 17 Si 1.001 2.999 18 H -0.282 1.282 19 H -0.339 1.339 20 H -0.243 1.243 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.047 0.953 24 H 0.099 0.901 25 H 0.079 0.921 26 H 0.189 0.811 27 H 0.171 0.829 28 H 0.139 0.861 29 H 0.375 0.625 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.184 -8.493 -4.530 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.100 4.100 3 H 0.092 0.908 4 C -0.092 4.092 5 C -0.038 4.038 6 N -0.216 5.216 7 C -0.074 4.074 8 C -0.189 4.189 9 C -0.103 4.103 10 C -0.162 4.162 11 C 0.230 3.770 12 O -0.363 6.363 13 C -0.581 4.581 14 H 0.047 0.953 15 C -0.172 4.172 16 N -0.576 5.576 17 Si 0.834 3.166 18 H -0.209 1.209 19 H -0.272 1.272 20 H -0.168 1.168 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.117 0.883 25 H 0.097 0.903 26 H 0.206 0.794 27 H 0.189 0.811 28 H 0.157 0.843 29 H 0.224 0.776 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.383 -7.970 -5.744 12.914 hybrid contribution 0.557 0.154 1.882 1.969 sum -7.826 -7.815 -3.862 11.715 Atomic orbital electron populations 1.21613 0.93384 1.01317 1.01840 1.22092 0.96509 0.98707 0.92702 0.90762 1.20963 1.02075 0.87878 0.98239 1.21931 0.95959 0.94537 0.91409 1.66859 1.13513 0.98559 1.42619 1.23197 0.95810 0.95454 0.92939 1.22380 1.01486 0.99526 0.95549 1.21361 0.95937 0.91567 1.01402 1.22356 0.99417 0.97586 0.96798 1.18561 0.86319 0.87252 0.84867 1.86127 1.51399 1.67514 1.31287 1.21282 0.91876 1.20396 1.24498 0.95302 1.25854 1.00187 0.96062 0.95123 1.70094 1.28196 1.29584 1.29775 0.84821 0.79021 0.73321 0.79464 1.20931 1.27177 1.16764 0.92669 0.91192 0.93401 0.88288 0.90314 0.79382 0.81140 0.84292 0.77596 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.25 8.49 71.98 0.61 -3.64 16 2 C -0.08 -3.23 2.16 -9.88 -0.02 -3.25 16 3 H 0.07 3.18 7.68 -2.38 -0.02 3.16 16 4 C -0.05 -1.99 6.30 30.55 0.19 -1.79 16 5 C 0.10 3.85 7.32 42.72 0.31 4.16 16 6 N -0.51 -18.27 10.35 -182.98 -1.89 -20.16 16 7 C 0.08 2.40 11.18 84.71 0.95 3.35 16 8 C -0.17 -4.68 10.12 22.35 0.23 -4.45 16 9 C -0.08 -2.63 9.96 22.47 0.22 -2.41 16 10 C -0.16 -6.46 5.12 -19.60 -0.10 -6.56 16 11 C 0.27 11.96 0.58 -11.66 -0.01 11.95 16 12 O -0.56 -22.95 7.00 -148.98 -1.04 -23.99 16 13 C -0.54 -29.79 8.71 25.60 0.22 -29.57 16 14 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 15 C 0.03 1.54 5.46 84.66 0.46 2.00 16 16 N -0.94 -57.49 13.96 21.45 0.30 -57.19 16 17 Si 1.00 47.34 24.68 68.60 1.69 49.04 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.34 -16.67 7.11 99.48 0.71 -15.97 16 20 H -0.24 -10.76 4.79 99.48 0.48 -10.29 16 21 H 0.05 2.00 6.13 -2.39 -0.01 1.98 16 22 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 23 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 24 H 0.10 3.09 7.91 -2.39 -0.02 3.07 16 25 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 26 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 27 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 28 H 0.14 4.27 8.00 -2.91 -0.02 4.24 16 29 H 0.38 13.79 8.74 -74.06 -0.65 13.14 16 30 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -67.79 245.77 2.39 -65.39 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.27 Total: 17.12 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 3.07 Total: -30.21 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -1.59 Total: -77.35 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -1.04 Total: -23.99 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.69 Total: 49.04 kcal Total: -67.79 2.39 -65.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928906.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.087 kcal (2) G-P(sol) polarization free energy of solvation -67.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds