Wall clock time and date at job start Mon Mar 30 2020 03:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00021 * 2 1 4 4 H 1.48501 * 109.46945 * 264.94909 * 3 2 1 5 5 H 1.48502 * 109.46856 * 24.94721 * 3 2 1 6 6 H 1.48495 * 109.46985 * 144.94411 * 3 2 1 7 7 C 1.37875 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99896 * 7.47355 * 7 2 1 9 9 C 1.50693 * 120.00166 * 187.47817 * 7 2 1 10 10 O 1.42898 * 109.30531 * 55.12099 * 9 7 2 11 11 C 1.52818 * 109.30716 * 295.72098 * 9 7 2 12 12 C 1.53313 * 108.48168 * 188.89704 * 11 9 7 13 13 C 1.52796 * 108.50480 * 69.81033 * 12 11 9 14 14 C 1.50472 * 110.45577 * 308.87036 * 13 12 11 15 15 C 1.38762 * 118.53803 * 197.49738 * 14 13 12 16 16 N 1.31671 * 121.01623 * 180.53424 * 15 14 13 17 17 C 1.31893 * 121.63939 * 359.97438 * 16 15 14 18 18 C 1.38047 * 120.59242 * 359.86359 * 17 16 15 19 19 C 1.37829 * 122.52630 * 17.81049 * 14 13 12 20 20 H 0.97001 * 120.00293 * 359.97438 * 1 2 3 21 21 H 0.96702 * 114.00268 * 59.99861 * 10 9 7 22 22 H 1.09001 * 109.63968 * 308.59744 * 11 9 7 23 23 H 1.09004 * 109.63602 * 69.19918 * 11 9 7 24 24 H 1.09006 * 109.63786 * 310.10085 * 12 11 9 25 25 H 1.09004 * 109.79339 * 189.60888 * 12 11 9 26 26 H 1.09001 * 109.30823 * 188.57306 * 13 12 11 27 27 H 1.08999 * 109.31174 * 69.17292 * 13 12 11 28 28 H 1.07999 * 119.49296 * 0.52453 * 15 14 13 29 29 H 1.08002 * 119.69905 * 179.87309 * 17 16 15 30 30 H 1.07999 * 120.33591 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6034 1.9848 -1.3947 5 1 1.3972 2.6811 0.5905 6 1 3.4891 1.4734 0.8041 7 6 2.0045 -1.1940 -0.0005 8 1 1.4714 -2.1254 -0.1226 9 6 3.5018 -1.1996 0.1693 10 8 3.8437 -0.5043 1.3700 11 6 4.1480 -0.4918 -1.0210 12 6 5.6649 -0.7013 -0.9460 13 6 5.9671 -2.1692 -1.2434 14 6 5.1213 -3.0656 -0.3799 15 6 5.4989 -4.3927 -0.2326 16 7 4.7887 -5.2224 0.5030 17 6 3.6953 -4.8306 1.1279 18 6 3.2602 -3.5242 1.0302 19 6 3.9862 -2.6199 0.2624 20 1 -0.4850 0.8400 0.0004 21 1 3.4628 -0.8908 2.1704 22 1 3.7655 -0.9141 -1.9502 23 1 3.9229 0.5739 -0.9797 24 1 6.0206 -0.4492 0.0531 25 1 6.1617 -0.0688 -1.6818 26 1 7.0204 -2.3677 -1.0454 27 1 5.7556 -2.3754 -2.2926 28 1 6.3887 -4.7506 -0.7289 29 1 3.1355 -5.5383 1.7214 30 1 2.3645 -3.2077 1.5439 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260949762.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:47 Heat of formation + Delta-G solvation = -16.096811 kcal Electronic energy + Delta-G solvation = -15174.692050 eV Core-core repulsion = 12741.670747 eV Total energy + Delta-G solvation = -2433.021303 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18762 -37.20967 -34.52599 -32.42594 -31.48479 -30.46353 -28.53412 -25.17221 -23.31185 -22.77884 -21.10092 -19.04557 -17.53282 -16.46972 -15.76759 -14.99346 -14.77231 -14.26884 -14.06127 -13.55627 -13.16051 -12.88948 -12.79687 -12.04002 -11.93999 -11.82042 -11.31782 -11.11226 -10.77645 -10.39875 -10.30123 -9.86200 -9.15101 -9.02529 -8.75413 -8.62914 -8.37037 -8.29180 -6.24636 -4.35511 1.64821 1.88448 3.29806 3.42320 3.61729 4.31872 4.41792 4.89924 5.06788 5.13190 5.24254 5.44361 5.49359 5.51304 5.59607 5.84506 5.96216 6.15077 6.20845 6.23449 6.33588 6.35999 6.56561 6.68149 6.85068 6.96916 7.28600 7.29595 7.50067 8.16399 8.44630 8.68329 8.87019 9.39191 10.85301 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.012689 C = 0.010291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.904562 B = 2206.102506 C = 2720.208595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.089 3.911 3 Si 0.877 3.123 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.221 1.221 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.255 3.745 10 O -0.567 6.567 11 C -0.107 4.107 12 C -0.123 4.123 13 C -0.072 4.072 14 C -0.129 4.129 15 C 0.082 3.918 16 N -0.496 5.496 17 C 0.071 3.929 18 C -0.145 4.145 19 C -0.025 4.025 20 H 0.267 0.733 21 H 0.361 0.639 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.510 -3.246 -0.074 10.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.116 4.116 3 Si 0.706 3.294 4 H -0.214 1.214 5 H -0.232 1.232 6 H -0.144 1.144 7 C -0.594 4.594 8 H 0.097 0.903 9 C 0.216 3.784 10 O -0.373 6.373 11 C -0.144 4.144 12 C -0.160 4.160 13 C -0.109 4.109 14 C -0.131 4.131 15 C -0.077 4.077 16 N -0.205 5.205 17 C -0.084 4.084 18 C -0.165 4.165 19 C -0.033 4.033 20 H 0.077 0.923 21 H 0.208 0.792 22 H 0.091 0.909 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.928 -3.656 -0.394 10.588 hybrid contribution -0.492 1.296 0.117 1.392 sum 9.436 -2.360 -0.277 9.730 Atomic orbital electron populations 1.69937 1.06706 1.27695 1.47730 1.24954 0.94577 0.99738 0.92369 0.87103 0.81943 0.81877 0.78470 1.21404 1.23219 1.14398 1.21396 0.89029 0.95326 1.53691 0.90332 1.17902 0.94148 0.82860 0.83493 1.86642 1.77134 1.56751 1.16810 1.21857 0.93302 1.00578 0.98643 1.21623 0.97712 0.94780 1.01908 1.20347 0.97805 0.94438 0.98326 1.20593 0.96790 0.95686 1.00041 1.22592 0.98796 0.89685 0.96604 1.67502 1.06868 1.37945 1.08215 1.22597 0.93311 0.94728 0.97748 1.22352 1.00670 0.93784 0.99646 1.20841 0.91497 0.98585 0.92356 0.92335 0.79225 0.90861 0.92083 0.91227 0.92388 0.91285 0.90869 0.83800 0.83541 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.96 55.43 0.77 -25.17 16 2 C 0.09 2.45 5.45 -17.82 -0.10 2.35 16 3 Si 0.88 21.31 23.78 -169.99 -4.04 17.27 16 4 H -0.29 -6.88 6.97 56.52 0.39 -6.49 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.22 -5.21 5.37 56.52 0.30 -4.91 16 7 C -0.56 -14.65 7.93 -34.44 -0.27 -14.92 16 8 H 0.08 2.25 7.16 -52.48 -0.38 1.87 16 9 C 0.26 5.69 0.49 -93.19 -0.05 5.64 16 10 O -0.57 -12.42 9.28 -35.23 -0.33 -12.74 16 11 C -0.11 -2.24 4.30 -26.66 -0.11 -2.35 16 12 C -0.12 -2.10 5.95 -26.67 -0.16 -2.25 16 13 C -0.07 -1.10 5.71 -28.10 -0.16 -1.26 16 14 C -0.13 -2.32 5.73 -104.69 -0.60 -2.92 16 15 C 0.08 1.37 10.80 -17.43 -0.19 1.19 16 16 N -0.50 -8.88 10.36 -13.19 -0.14 -9.02 16 17 C 0.07 1.23 11.19 -17.60 -0.20 1.04 16 18 C -0.14 -2.78 8.76 -39.34 -0.34 -3.12 16 19 C -0.02 -0.50 4.99 -104.63 -0.52 -1.02 16 20 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.36 7.06 8.98 45.56 0.41 7.47 16 22 H 0.07 1.54 8.08 -51.93 -0.42 1.12 16 23 H 0.06 1.35 3.60 -51.93 -0.19 1.17 16 24 H 0.07 1.25 7.67 -51.93 -0.40 0.85 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.14 2.75 7.23 -52.49 -0.38 2.37 16 LS Contribution 239.69 15.07 3.61 3.61 Total: -1.00 -30.07 239.69 -5.53 -35.59 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -2.71 Total: 8.09 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -2.70 Total: -17.63 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.64 Total: -34.19 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.33 Total: -12.74 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.04 Total: 17.27 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.07 -5.53 -35.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260949762.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.497 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds