Wall clock time and date at job start Mon Mar 30 2020 03:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 120.00029 * 2 1 4 4 H 1.48504 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47329 * 300.00212 * 3 2 1 6 6 H 1.48504 * 109.47175 * 59.99699 * 3 2 1 7 7 C 1.37877 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99610 * 186.90074 * 7 2 1 9 9 C 1.50703 * 120.00365 * 6.90624 * 7 2 1 10 10 O 1.42896 * 109.29949 * 304.48950 * 9 7 2 11 11 C 1.52828 * 109.14310 * 63.98686 * 9 7 2 12 12 C 1.53309 * 108.46104 * 171.02517 * 11 9 7 13 13 C 1.52804 * 108.50798 * 290.17265 * 12 11 9 14 14 C 1.50467 * 110.46657 * 51.08201 * 13 12 11 15 15 C 1.38762 * 118.54024 * 162.46438 * 14 13 12 16 16 N 1.31676 * 121.01141 * 179.39745 * 15 14 13 17 17 C 1.31893 * 121.64622 * 0.61660 * 16 15 14 18 18 C 1.38055 * 120.58725 * 359.52190 * 17 16 15 19 19 C 1.37840 * 122.52763 * 342.31630 * 14 13 12 20 20 H 0.96998 * 120.00009 * 359.97438 * 1 2 3 21 21 H 0.96705 * 114.00264 * 300.40476 * 10 9 7 22 22 H 1.09000 * 109.63976 * 290.71682 * 11 9 7 23 23 H 1.08997 * 109.63575 * 51.33444 * 11 9 7 24 24 H 1.09001 * 109.63552 * 49.88127 * 12 11 9 25 25 H 1.08996 * 109.63010 * 170.46806 * 12 11 9 26 26 H 1.08997 * 109.30770 * 171.38822 * 13 12 11 27 27 H 1.09004 * 109.30443 * 290.98181 * 13 12 11 28 28 H 1.07996 * 119.49872 * 359.68105 * 15 14 13 29 29 H 1.08001 * 119.70521 * 179.79942 * 17 16 15 30 30 H 1.07996 * 120.34014 * 180.21538 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0786 -1.1974 0.1129 9 6 1.2592 -2.4946 -0.1558 10 8 0.2509 -2.5852 0.8527 11 6 0.6001 -2.5319 -1.5341 12 6 0.0401 -3.9400 -1.7665 13 6 1.2117 -4.9045 -1.9454 14 6 2.1972 -4.7499 -0.8190 15 6 3.1180 -5.7645 -0.5997 16 7 4.0099 -5.6745 0.3648 17 6 4.0588 -4.6284 1.1667 18 6 3.1727 -3.5814 1.0103 19 6 2.2207 -3.6400 -0.0019 20 1 -0.4850 0.8400 0.0004 21 1 0.5941 -2.5522 1.7562 22 1 -0.2106 -1.8043 -1.5724 23 1 1.3401 -2.3009 -2.3004 24 1 -0.5561 -4.2436 -0.9060 25 1 -0.5783 -3.9446 -2.6640 26 1 0.8371 -5.9280 -1.9585 27 1 1.7124 -4.6920 -2.8900 28 1 3.1059 -6.6395 -1.2326 29 1 4.8015 -4.5886 1.9497 30 1 3.2185 -2.7252 1.6669 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260949766.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:51 Heat of formation + Delta-G solvation = -26.059017 kcal Electronic energy + Delta-G solvation = -15091.609941 eV Core-core repulsion = 12658.156644 eV Total energy + Delta-G solvation = -2433.453296 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.00378 -36.82618 -34.23243 -32.25160 -31.33364 -30.11939 -28.08102 -25.16298 -23.13766 -22.46675 -21.16244 -18.70996 -17.09864 -16.38501 -15.57766 -14.84856 -14.55720 -14.06509 -13.89581 -13.33008 -13.17291 -12.72095 -12.38498 -11.80303 -11.62409 -11.29119 -11.10789 -11.04116 -10.57861 -10.22943 -10.16299 -9.91933 -9.45468 -8.74527 -8.63537 -8.59399 -8.27983 -8.17969 -6.08065 -4.27567 1.73408 2.00205 3.20560 3.30202 3.33743 4.29732 4.43466 4.97421 5.15206 5.29399 5.47177 5.60101 5.67673 5.75277 5.91065 6.00452 6.19214 6.34264 6.37863 6.47085 6.52827 6.62824 6.88592 6.92742 7.25907 7.35406 7.52061 7.69122 7.80320 8.09438 8.52424 8.70285 9.26335 9.48108 10.91941 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032361 B = 0.011661 C = 0.009646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.042065 B = 2400.584132 C = 2902.176912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.084 3.916 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.566 4.566 8 H 0.060 0.940 9 C 0.286 3.714 10 O -0.545 6.545 11 C -0.089 4.089 12 C -0.123 4.123 13 C -0.072 4.072 14 C -0.129 4.129 15 C 0.080 3.920 16 N -0.500 5.500 17 C 0.068 3.932 18 C -0.151 4.151 19 C -0.030 4.030 20 H 0.260 0.740 21 H 0.349 0.651 22 H 0.088 0.912 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -6.184 -1.193 6.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.123 4.123 3 Si 0.713 3.287 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.603 4.603 8 H 0.078 0.922 9 C 0.246 3.754 10 O -0.348 6.348 11 C -0.127 4.127 12 C -0.160 4.160 13 C -0.110 4.110 14 C -0.131 4.131 15 C -0.078 4.078 16 N -0.209 5.209 17 C -0.087 4.087 18 C -0.171 4.171 19 C -0.038 4.038 20 H 0.070 0.930 21 H 0.193 0.807 22 H 0.106 0.894 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.456 -6.775 -1.597 7.381 hybrid contribution 0.422 1.711 0.349 1.797 sum 2.877 -5.064 -1.249 5.957 Atomic orbital electron populations 1.70130 1.05692 1.26201 1.46198 1.24992 0.94710 0.98884 0.93750 0.86659 0.80401 0.83889 0.77778 1.19676 1.20780 1.20893 1.21611 0.93754 0.90625 1.54332 0.92215 1.17552 0.83224 0.87581 0.87020 1.86558 1.35940 1.96237 1.16026 1.21414 1.00834 0.94695 0.95773 1.21655 0.96442 0.97003 1.00921 1.20377 0.95255 0.99711 0.95645 1.20639 0.98480 0.95101 0.98846 1.22596 0.91774 0.97928 0.95531 1.67486 1.22579 1.25658 1.05159 1.22559 0.98282 0.90084 0.97749 1.22309 0.95772 0.99439 0.99560 1.21348 0.95498 0.95252 0.91679 0.93044 0.80711 0.89362 0.92894 0.91564 0.92947 0.91701 0.91228 0.83954 0.83801 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.11 11.21 55.43 0.62 -22.49 16 2 C 0.08 2.19 5.21 -17.82 -0.09 2.09 16 3 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.57 -14.54 7.31 -34.44 -0.25 -14.79 16 8 H 0.06 1.55 6.94 -52.49 -0.36 1.18 16 9 C 0.29 6.76 0.52 -93.19 -0.05 6.71 16 10 O -0.55 -13.41 11.40 -35.23 -0.40 -13.81 16 11 C -0.09 -2.04 4.63 -26.66 -0.12 -2.16 16 12 C -0.12 -2.32 5.95 -26.67 -0.16 -2.48 16 13 C -0.07 -1.21 5.71 -28.10 -0.16 -1.37 16 14 C -0.13 -2.45 5.73 -104.69 -0.60 -3.05 16 15 C 0.08 1.42 10.80 -17.42 -0.19 1.23 16 16 N -0.50 -9.26 10.36 -13.19 -0.14 -9.40 16 17 C 0.07 1.21 11.19 -17.59 -0.20 1.02 16 18 C -0.15 -2.96 8.76 -39.34 -0.34 -3.31 16 19 C -0.03 -0.63 4.99 -104.63 -0.52 -1.15 16 20 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 21 H 0.35 7.84 8.97 45.56 0.41 8.25 16 22 H 0.09 2.24 6.90 -51.93 -0.36 1.89 16 23 H 0.05 1.20 8.08 -51.93 -0.42 0.78 16 24 H 0.07 1.34 7.68 -51.93 -0.40 0.94 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 29 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.14 2.64 7.24 -52.49 -0.38 2.26 16 LS Contribution 249.29 15.07 3.76 3.76 Total: -1.00 -28.60 249.29 -6.63 -35.23 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -2.76 Total: 8.73 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.69 Total: -17.26 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.48 Total: -31.89 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.40 Total: -13.81 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.60 -6.63 -35.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260949766.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.175 kcal (2) G-P(sol) polarization free energy of solvation -28.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds