Wall clock time and date at job start Mon Mar 30 2020 03:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 120.00029 * 2 1 4 4 H 1.48504 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47329 * 300.00212 * 3 2 1 6 6 H 1.48504 * 109.47175 * 59.99699 * 3 2 1 7 7 C 1.37877 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99610 * 186.90074 * 7 2 1 9 9 C 1.50703 * 120.00365 * 6.90624 * 7 2 1 10 10 O 1.42896 * 109.29949 * 304.48950 * 9 7 2 11 11 C 1.52828 * 109.14310 * 63.98686 * 9 7 2 12 12 C 1.53309 * 108.46104 * 171.02517 * 11 9 7 13 13 C 1.52804 * 108.50798 * 290.17265 * 12 11 9 14 14 C 1.50467 * 110.46657 * 51.08201 * 13 12 11 15 15 C 1.38762 * 118.54024 * 162.46438 * 14 13 12 16 16 N 1.31676 * 121.01141 * 179.39745 * 15 14 13 17 17 C 1.31893 * 121.64622 * 0.61660 * 16 15 14 18 18 C 1.38055 * 120.58725 * 359.52190 * 17 16 15 19 19 C 1.37840 * 122.52763 * 342.31630 * 14 13 12 20 20 H 0.96998 * 120.00009 * 359.97438 * 1 2 3 21 21 H 0.96705 * 114.00264 * 300.40476 * 10 9 7 22 22 H 1.09000 * 109.63976 * 290.71682 * 11 9 7 23 23 H 1.08997 * 109.63575 * 51.33444 * 11 9 7 24 24 H 1.09001 * 109.63552 * 49.88127 * 12 11 9 25 25 H 1.08996 * 109.63010 * 170.46806 * 12 11 9 26 26 H 1.08997 * 109.30770 * 171.38822 * 13 12 11 27 27 H 1.09004 * 109.30443 * 290.98181 * 13 12 11 28 28 H 1.07996 * 119.49872 * 359.68105 * 15 14 13 29 29 H 1.08001 * 119.70521 * 179.79942 * 17 16 15 30 30 H 1.07996 * 120.34014 * 180.21538 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0786 -1.1974 0.1129 9 6 1.2592 -2.4946 -0.1558 10 8 0.2509 -2.5852 0.8527 11 6 0.6001 -2.5319 -1.5341 12 6 0.0401 -3.9400 -1.7665 13 6 1.2117 -4.9045 -1.9454 14 6 2.1972 -4.7499 -0.8190 15 6 3.1180 -5.7645 -0.5997 16 7 4.0099 -5.6745 0.3648 17 6 4.0588 -4.6284 1.1667 18 6 3.1727 -3.5814 1.0103 19 6 2.2207 -3.6400 -0.0019 20 1 -0.4850 0.8400 0.0004 21 1 0.5941 -2.5522 1.7562 22 1 -0.2106 -1.8043 -1.5724 23 1 1.3401 -2.3009 -2.3004 24 1 -0.5561 -4.2436 -0.9060 25 1 -0.5783 -3.9446 -2.6640 26 1 0.8371 -5.9280 -1.9585 27 1 1.7124 -4.6920 -2.8900 28 1 3.1059 -6.6395 -1.2326 29 1 4.8015 -4.5886 1.9497 30 1 3.2185 -2.7252 1.6669 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260949766.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:50 Heat of formation + Delta-G solvation = -45.082448 kcal Electronic energy + Delta-G solvation = -15092.434859 eV Core-core repulsion = 12658.156644 eV Total energy + Delta-G solvation = -2434.278214 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.49469 -38.49324 -35.84434 -34.24916 -32.88754 -31.66401 -29.73668 -26.99718 -24.65119 -24.00014 -22.78182 -20.31954 -19.00451 -17.95918 -17.09698 -16.69237 -16.15712 -15.71378 -15.34983 -14.90638 -14.82379 -14.23951 -14.06211 -13.36002 -13.17398 -13.11268 -12.89175 -12.79191 -12.27303 -12.10482 -11.76899 -11.59601 -11.16189 -10.59394 -10.35603 -10.22092 -9.95065 -9.66374 -8.07388 -6.32202 0.32167 0.49049 1.36949 1.41460 1.50636 2.38925 2.97373 3.16084 3.67575 3.90725 3.99430 4.09531 4.21954 4.28006 4.33107 4.54130 4.71266 4.84474 4.95761 5.02475 5.04747 5.11727 5.33982 5.36795 5.59409 5.64072 5.74431 5.95142 6.00961 6.18489 6.71243 7.11215 7.33448 7.53725 8.91765 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032361 B = 0.011661 C = 0.009646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.042065 B = 2400.584132 C = 2902.176912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.040 3.960 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.574 4.574 8 H 0.052 0.948 9 C 0.279 3.721 10 O -0.560 6.560 11 C -0.089 4.089 12 C -0.115 4.115 13 C -0.068 4.068 14 C -0.138 4.138 15 C 0.086 3.914 16 N -0.507 5.507 17 C 0.073 3.927 18 C -0.164 4.164 19 C -0.058 4.058 20 H 0.258 0.742 21 H 0.353 0.647 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.181 0.819 29 H 0.175 0.825 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.490 -7.668 -1.825 8.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.611 4.611 8 H 0.070 0.930 9 C 0.240 3.760 10 O -0.364 6.364 11 C -0.127 4.127 12 C -0.152 4.152 13 C -0.105 4.105 14 C -0.140 4.140 15 C -0.072 4.072 16 N -0.216 5.216 17 C -0.082 4.082 18 C -0.184 4.184 19 C -0.066 4.066 20 H 0.068 0.932 21 H 0.197 0.803 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.198 0.802 29 H 0.192 0.808 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.540 -8.263 -2.226 9.261 hybrid contribution 0.106 2.138 0.560 2.213 sum 3.647 -6.125 -1.667 7.321 Atomic orbital electron populations 1.70248 1.06897 1.26688 1.47494 1.25639 0.95353 1.01710 0.93659 0.85749 0.79211 0.80418 0.77649 1.19463 1.20671 1.20621 1.21883 0.93521 0.92067 1.53670 0.92998 1.17571 0.83459 0.88018 0.86931 1.86520 1.36955 1.96343 1.16564 1.21310 0.99523 0.96520 0.95391 1.21554 0.97497 0.94929 1.01250 1.20427 0.93794 1.00831 0.95455 1.20934 0.99416 0.94626 0.99051 1.23141 0.90467 0.98390 0.95222 1.67606 1.22886 1.25631 1.05504 1.22964 0.98046 0.89098 0.98066 1.22322 0.96408 1.00145 0.99527 1.21215 0.96030 0.95656 0.93678 0.93224 0.80313 0.92856 0.93458 0.93263 0.90590 0.88203 0.89489 0.80194 0.80759 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.11 11.21 21.45 0.24 -48.87 16 2 C 0.04 2.14 5.21 84.65 0.44 2.59 16 3 Si 0.94 42.19 29.54 68.60 2.03 44.22 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.57 -30.06 7.31 25.60 0.19 -29.88 16 8 H 0.05 2.73 6.94 -2.91 -0.02 2.71 16 9 C 0.28 13.43 0.52 -12.46 -0.01 13.42 16 10 O -0.56 -28.37 11.40 -148.98 -1.70 -30.07 16 11 C -0.09 -4.13 4.63 30.64 0.14 -3.99 16 12 C -0.11 -4.19 5.95 30.63 0.18 -4.01 16 13 C -0.07 -2.05 5.71 29.71 0.17 -1.88 16 14 C -0.14 -4.95 5.73 -19.91 -0.11 -5.07 16 15 C 0.09 2.73 10.80 84.84 0.92 3.65 16 16 N -0.51 -17.25 10.36 -195.64 -2.03 -19.27 16 17 C 0.07 2.44 11.19 84.64 0.95 3.38 16 18 C -0.16 -6.35 8.76 22.43 0.20 -6.15 16 19 C -0.06 -2.42 4.99 -19.87 -0.10 -2.52 16 20 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 21 H 0.35 16.47 8.97 -74.05 -0.66 15.81 16 22 H 0.05 2.80 6.90 -2.39 -0.02 2.78 16 23 H 0.05 2.16 8.08 -2.39 -0.02 2.14 16 24 H 0.05 1.95 7.68 -2.39 -0.02 1.93 16 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.10 2.37 8.13 -2.39 -0.02 2.35 16 27 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.18 4.26 8.06 -2.91 -0.02 4.24 16 29 H 0.18 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.13 5.08 7.24 -2.91 -0.02 5.06 16 Total: -1.00 -61.52 249.29 1.99 -59.53 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.49 Total: 24.91 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 2.96 Total: -30.45 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -1.79 Total: -68.14 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -1.70 Total: -30.07 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -61.52 1.99 -59.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260949766.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.445 kcal (2) G-P(sol) polarization free energy of solvation -61.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds