Wall clock time and date at job start Mon Mar 30 2020 02:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00212 * 2 1 4 4 H 1.48500 * 109.47113 * 264.60903 * 3 2 1 5 5 H 1.48509 * 109.46892 * 24.61162 * 3 2 1 6 6 H 1.48504 * 109.47337 * 144.60826 * 3 2 1 7 7 C 1.37883 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99937 * 8.36927 * 7 2 1 9 9 C 1.50704 * 119.99873 * 188.37347 * 7 2 1 10 10 O 1.42901 * 109.22717 * 55.47743 * 9 7 2 11 11 C 1.52771 * 109.25522 * 296.01227 * 9 7 2 12 12 C 1.53319 * 108.36499 * 188.81270 * 11 9 7 13 13 C 1.52712 * 108.45661 * 69.78249 * 12 11 9 14 14 C 1.50720 * 110.58230 * 308.67381 * 13 12 11 15 15 N 1.32701 * 117.57152 * 197.81649 * 14 13 12 16 16 C 1.31509 * 122.39653 * 180.65706 * 15 14 13 17 17 C 1.38236 * 120.61561 * 359.97438 * 16 15 14 18 18 C 1.38416 * 118.84410 * 359.86326 * 17 16 15 19 19 C 1.37603 * 122.32777 * 18.18010 * 14 13 12 20 20 H 0.96997 * 120.00076 * 0.02562 * 1 2 3 21 21 H 0.96699 * 114.00087 * 59.46441 * 10 9 7 22 22 H 1.09004 * 109.68464 * 69.09757 * 11 9 7 23 23 H 1.08995 * 109.72155 * 308.54953 * 11 9 7 24 24 H 1.09003 * 109.64019 * 310.09834 * 12 11 9 25 25 H 1.08999 * 109.64330 * 189.47632 * 12 11 9 26 26 H 1.08999 * 109.25704 * 188.38375 * 13 12 11 27 27 H 1.09006 * 109.22290 * 68.93149 * 13 12 11 28 28 H 1.08003 * 119.69481 * 179.97438 * 16 15 14 29 29 H 1.08002 * 120.58611 * 179.88489 * 17 16 15 30 30 H 1.07993 * 120.57146 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6106 1.9806 -1.3939 5 1 1.3942 2.6829 0.5831 6 1 3.4851 1.4757 0.8109 7 6 2.0045 -1.1941 0.0005 8 1 1.4731 -2.1245 -0.1352 9 6 3.4995 -1.2010 0.1906 10 8 3.8226 -0.5209 1.4052 11 6 4.1598 -0.4786 -0.9825 12 6 5.6757 -0.6874 -0.8868 13 6 5.9825 -2.1512 -1.1952 14 6 5.1277 -3.0610 -0.3507 15 7 5.5116 -4.3254 -0.2281 16 6 4.8304 -5.2035 0.4750 17 6 3.6675 -4.8351 1.1253 18 6 3.2334 -3.5246 1.0260 19 6 3.9826 -2.6238 0.2746 20 1 -0.4850 0.8400 -0.0004 21 1 3.4239 -0.9135 2.1938 22 1 3.9320 0.5862 -0.9332 23 1 3.7911 -0.8898 -1.9222 24 1 6.0159 -0.4461 0.1202 25 1 6.1801 -0.0470 -1.6104 26 1 7.0338 -2.3498 -0.9866 27 1 5.7821 -2.3457 -2.2489 28 1 5.1828 -6.2220 0.5451 29 1 3.1074 -5.5571 1.7010 30 1 2.3289 -3.2064 1.5230 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260951132.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:05 Heat of formation + Delta-G solvation = -35.983748 kcal Electronic energy + Delta-G solvation = -15184.418561 eV Core-core repulsion = 12750.534896 eV Total energy + Delta-G solvation = -2433.883665 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.60310 -38.67197 -35.87555 -34.47665 -33.40295 -31.37693 -30.43184 -26.98902 -24.80731 -24.21894 -22.56059 -20.67647 -19.40754 -17.77586 -17.28700 -17.04634 -16.69356 -15.67134 -15.25280 -15.07708 -14.81417 -14.48562 -14.02865 -13.66808 -13.49965 -13.29726 -13.11012 -12.90971 -12.50920 -12.04500 -11.72498 -11.46173 -11.00504 -10.65994 -10.61313 -10.50414 -9.92789 -9.64970 -8.37660 -6.49219 0.27711 0.43458 1.35775 1.44591 1.67271 2.39116 2.89345 3.02529 3.39994 3.71458 3.91349 4.06683 4.14482 4.17522 4.26473 4.38402 4.48388 4.72805 4.77180 4.91801 4.96679 4.99668 5.20268 5.22265 5.33911 5.45002 5.59674 5.70923 5.89547 6.09785 6.59380 7.08647 7.11182 7.31189 8.76060 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.035589 B = 0.012747 C = 0.010329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.566059 B = 2196.127203 C = 2710.225186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.039 3.961 3 Si 0.936 3.064 4 H -0.279 1.279 5 H -0.313 1.313 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.041 0.959 9 C 0.263 3.737 10 O -0.571 6.571 11 C -0.115 4.115 12 C -0.112 4.112 13 C -0.060 4.060 14 C 0.115 3.885 15 N -0.511 5.511 16 C 0.092 3.908 17 C -0.182 4.182 18 C -0.073 4.073 19 C -0.142 4.142 20 H 0.267 0.733 21 H 0.368 0.632 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.188 0.812 29 H 0.161 0.839 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.922 -5.314 0.908 12.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.206 1.206 5 H -0.242 1.242 6 H -0.133 1.133 7 C -0.587 4.587 8 H 0.059 0.941 9 C 0.223 3.777 10 O -0.378 6.378 11 C -0.152 4.152 12 C -0.150 4.150 13 C -0.098 4.098 14 C -0.019 4.019 15 N -0.221 5.221 16 C -0.068 4.068 17 C -0.202 4.202 18 C -0.099 4.099 19 C -0.144 4.144 20 H 0.076 0.924 21 H 0.216 0.784 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.205 0.795 29 H 0.178 0.822 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.885 -5.111 0.076 12.938 hybrid contribution -1.839 0.627 0.743 2.080 sum 10.046 -4.484 0.818 11.032 Atomic orbital electron populations 1.70062 1.08342 1.28341 1.50470 1.25695 0.95065 1.02972 0.92445 0.86182 0.80754 0.77871 0.78854 1.20623 1.24163 1.13255 1.21671 0.91861 0.93572 1.51646 0.94106 1.17691 0.91533 0.84819 0.83650 1.86548 1.76357 1.57738 1.17201 1.21860 0.96227 0.99392 0.97712 1.21575 0.94833 0.95825 1.02752 1.20359 0.98909 0.92043 0.98441 1.21368 0.92934 0.91660 0.95947 1.67556 1.33752 1.02536 1.18251 1.23174 0.91608 0.99794 0.92201 1.22410 0.98911 0.96480 1.02390 1.21865 0.98254 0.93818 0.95987 1.21260 0.95574 0.98729 0.98817 0.92443 0.78448 0.93125 0.91472 0.91720 0.88859 0.88526 0.89395 0.79482 0.82153 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.96 21.45 0.30 -56.42 16 2 C 0.04 2.18 5.45 84.66 0.46 2.64 16 3 Si 0.94 44.76 23.76 68.60 1.63 46.39 16 4 H -0.28 -12.92 6.98 99.48 0.69 -12.23 16 5 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 6 H -0.21 -9.54 5.39 99.48 0.54 -9.00 16 7 C -0.55 -29.87 7.89 25.60 0.20 -29.67 16 8 H 0.04 2.46 7.11 -2.91 -0.02 2.44 16 9 C 0.26 11.84 0.48 -12.43 -0.01 11.84 16 10 O -0.57 -24.92 9.38 -148.98 -1.40 -26.32 16 11 C -0.11 -4.75 4.28 30.63 0.13 -4.62 16 12 C -0.11 -3.65 5.95 30.61 0.18 -3.47 16 13 C -0.06 -1.86 5.92 29.76 0.18 -1.69 16 14 C 0.12 4.26 6.62 42.28 0.28 4.54 16 15 N -0.51 -17.49 10.19 -184.01 -1.87 -19.37 16 16 C 0.09 2.65 11.19 84.74 0.95 3.60 16 17 C -0.18 -5.48 10.12 22.31 0.23 -5.25 16 18 C -0.07 -2.79 8.74 22.54 0.20 -2.59 16 19 C -0.14 -5.81 5.00 -19.85 -0.10 -5.91 16 20 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 21 H 0.37 14.57 8.95 -74.06 -0.66 13.91 16 22 H 0.05 2.18 3.51 -2.38 -0.01 2.17 16 23 H 0.07 2.82 8.08 -2.39 -0.02 2.80 16 24 H 0.06 2.20 7.66 -2.39 -0.02 2.18 16 25 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 28 H 0.19 3.75 8.06 -2.91 -0.02 3.72 16 29 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.13 5.05 7.16 -2.91 -0.02 5.03 16 Total: -1.00 -65.78 239.74 1.67 -64.12 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.31 Total: 22.18 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 2.70 Total: -30.58 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -1.58 Total: -75.79 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -1.40 Total: -26.32 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.63 Total: 46.39 kcal Total: -65.78 1.67 -64.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260951132.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.133 kcal (2) G-P(sol) polarization free energy of solvation -65.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds