Wall clock time and date at job start Mon Mar 30 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47093 * 269.99841 * 3 2 1 5 5 H 1.48501 * 109.47017 * 29.99278 * 3 2 1 6 6 H 1.48494 * 109.47383 * 149.99515 * 3 2 1 7 7 C 1.37874 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99824 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46856 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.26715 * 307.06865 * 10 9 7 12 12 C 1.53756 * 110.30040 * 185.00182 * 10 9 7 13 13 C 1.51208 * 104.52676 * 240.97488 * 12 10 9 14 14 C 1.38543 * 108.56559 * 359.97438 * 13 12 10 15 15 C 1.39684 * 119.06122 * 179.97438 * 14 13 12 16 16 C 1.37896 * 120.40210 * 359.97438 * 15 14 13 17 17 C 1.38177 * 120.28958 * 359.86180 * 16 15 14 18 18 C 1.38613 * 130.99574 * 180.02562 * 13 12 10 19 19 O 1.35905 * 119.97789 * 359.94620 * 18 13 12 20 20 N 1.39587 * 111.64175 * 0.02562 * 14 13 12 21 21 H 0.96996 * 119.99960 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47035 * 60.00155 * 9 7 2 23 23 H 1.09004 * 109.47051 * 300.00012 * 9 7 2 24 24 H 1.09002 * 110.42483 * 122.21566 * 12 10 9 25 25 H 1.08998 * 110.52686 * 359.78460 * 12 10 9 26 26 H 1.08005 * 119.79490 * 180.02562 * 15 14 13 27 27 H 1.07991 * 119.85515 * 179.97438 * 16 15 14 28 28 H 1.07995 * 120.11626 * 180.22080 * 17 16 15 29 29 H 0.96705 * 113.99576 * 90.00444 * 19 18 13 30 30 H 0.96994 * 124.95339 * 179.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 1 2.9592 -3.5491 -0.8133 12 6 1.5001 -5.0011 -0.1218 13 6 1.8509 -5.7495 1.1444 14 6 2.6902 -4.9549 1.9083 15 6 3.1512 -5.4383 3.1351 16 6 2.7749 -6.6887 3.5784 17 6 1.9349 -7.4755 2.8139 18 6 1.4756 -7.0069 1.5911 19 8 0.6519 -7.7786 0.8340 20 7 2.9481 -3.7320 1.2866 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 1.8480 -5.5501 -0.9969 25 1 0.4244 -4.8359 -0.1802 26 1 3.8057 -4.8286 3.7405 27 1 3.1369 -7.0537 4.5281 28 1 1.6392 -8.4529 3.1655 29 1 1.1155 -8.3550 0.2111 30 1 3.5103 -3.0309 1.6514 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260957932.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:43 Heat of formation + Delta-G solvation = -43.761778 kcal Electronic energy + Delta-G solvation = -14259.701418 eV Core-core repulsion = 11825.480473 eV Total energy + Delta-G solvation = -2434.220946 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.38979 -38.72870 -36.81267 -34.98337 -32.24968 -31.66200 -29.29531 -28.35222 -25.14390 -23.05552 -22.26533 -21.74515 -19.44574 -18.51561 -17.42977 -16.82157 -16.61414 -16.37952 -15.63920 -15.20960 -15.06661 -14.27467 -13.82340 -13.62341 -13.35321 -13.11120 -12.94136 -12.82874 -12.41996 -12.33234 -12.07871 -11.86092 -11.51988 -11.12720 -10.77428 -10.61674 -9.41512 -8.23866 -8.14766 -6.34037 0.45008 0.71710 1.38668 1.39572 1.50147 2.37884 2.63360 2.87084 3.12571 3.43366 3.80530 3.92730 4.26876 4.29772 4.48918 4.62581 4.66749 4.81922 4.96455 5.06899 5.12450 5.33922 5.45786 5.58725 5.60616 5.67534 5.75684 5.89533 6.15970 6.33263 6.81167 6.97149 7.10127 7.35302 8.89463 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.047762 B = 0.006852 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.101165 B = 4085.420522 C = 4422.844228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.533 4.533 8 H 0.064 0.936 9 C 0.023 3.977 10 C 0.156 3.844 11 H 0.072 0.928 12 C -0.069 4.069 13 C -0.229 4.229 14 C 0.200 3.800 15 C -0.210 4.210 16 C -0.053 4.053 17 C -0.213 4.213 18 C 0.153 3.847 19 O -0.510 6.510 20 N -0.725 5.725 21 H 0.263 0.737 22 H 0.003 0.997 23 H -0.015 1.015 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.131 0.869 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.407 0.593 30 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.193 -13.619 3.789 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.571 4.571 8 H 0.082 0.918 9 C -0.015 4.015 10 C 0.050 3.950 11 H 0.090 0.910 12 C -0.106 4.106 13 C -0.235 4.235 14 C 0.094 3.906 15 C -0.233 4.233 16 C -0.072 4.072 17 C -0.234 4.234 18 C 0.108 3.892 19 O -0.323 6.323 20 N -0.353 5.353 21 H 0.072 0.928 22 H 0.021 0.979 23 H 0.003 0.997 24 H 0.112 0.888 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.176 0.824 28 H 0.165 0.835 29 H 0.266 0.734 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 6.586 -13.116 3.935 15.195 hybrid contribution 0.412 1.325 -0.321 1.424 sum 6.998 -11.791 3.615 14.180 Atomic orbital electron populations 1.70108 1.07955 1.27756 1.51623 1.25981 0.95674 1.03411 0.94783 0.85435 0.78613 0.78441 0.78456 1.19763 1.21213 1.18561 1.21538 0.93422 0.91736 1.50394 0.91758 1.19387 0.94041 0.93175 0.94939 1.21411 0.93490 0.94529 0.85534 0.90999 1.20947 1.00062 0.93554 0.96042 1.20397 1.05805 0.97399 0.99916 1.18661 0.92836 0.86245 0.92870 1.20632 1.08043 0.99077 0.95541 1.20945 0.94759 0.92005 0.99472 1.21266 1.03514 1.02813 0.95772 1.17915 0.90756 0.88626 0.91866 1.84728 1.34771 1.57399 1.55358 1.44982 1.53347 1.15717 1.21297 0.92835 0.97857 0.99679 0.88793 0.91967 0.85123 0.82391 0.83537 0.73422 0.74938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.53 -29.50 8.96 25.60 0.23 -29.27 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.19 4.46 29.85 0.13 1.32 16 10 C 0.16 6.50 3.60 45.24 0.16 6.66 16 11 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 12 C -0.07 -2.54 6.54 30.26 0.20 -2.35 16 13 C -0.23 -8.12 6.19 -19.54 -0.12 -8.24 16 14 C 0.20 7.13 7.03 38.33 0.27 7.40 16 15 C -0.21 -6.12 10.07 22.54 0.23 -5.89 16 16 C -0.05 -1.29 10.01 22.17 0.22 -1.07 16 17 C -0.21 -5.44 10.00 22.39 0.22 -5.21 16 18 C 0.15 4.65 6.70 22.49 0.15 4.80 16 19 O -0.51 -13.56 13.46 -92.48 -1.25 -14.81 16 20 N -0.72 -28.01 6.02 -317.41 -1.91 -29.92 16 21 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 22 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 23 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 24 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 25 H 0.06 2.52 7.71 -2.39 -0.02 2.50 16 26 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.16 2.61 8.06 -2.92 -0.02 2.58 16 28 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 29 H 0.41 6.40 9.06 -74.05 -0.67 5.73 16 30 H 0.41 15.29 8.96 -92.71 -0.83 14.46 16 Total: -1.00 -67.89 261.18 0.97 -66.92 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.34 Total: 20.25 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 2.16 Total: -31.42 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -1.62 Total: -86.79 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -1.25 Total: -14.81 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -67.89 0.97 -66.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957932.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.157 kcal (2) G-P(sol) polarization free energy of solvation -67.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds