Wall clock time and date at job start Mon Mar 30 2020 02:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00590 * 2 1 4 4 H 1.48500 * 109.47578 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46893 * 299.99984 * 3 2 1 6 6 H 1.48503 * 109.47157 * 59.99809 * 3 2 1 7 7 C 1.37884 * 119.99545 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00054 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99895 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46952 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.26479 * 52.92710 * 10 9 7 12 12 C 1.53751 * 110.30042 * 174.99860 * 10 9 7 13 13 C 1.51208 * 104.52608 * 119.02313 * 12 10 9 14 14 C 1.38534 * 108.56423 * 359.97438 * 13 12 10 15 15 C 1.39691 * 119.06126 * 180.02562 * 14 13 12 16 16 C 1.37898 * 120.39568 * 0.02562 * 15 14 13 17 17 C 1.38172 * 120.29494 * 359.97438 * 16 15 14 18 18 C 1.38615 * 130.99231 * 180.02562 * 13 12 10 19 19 O 1.35894 * 119.98036 * 359.68231 * 18 13 12 20 20 N 1.39587 * 111.64354 * 0.02562 * 14 13 12 21 21 H 0.97008 * 119.99521 * 0.02562 * 1 2 3 22 22 H 1.08991 * 109.47149 * 60.00380 * 9 7 2 23 23 H 1.09002 * 109.46682 * 299.99707 * 9 7 2 24 24 H 1.08997 * 110.42680 * 0.25768 * 12 10 9 25 25 H 1.09000 * 110.52465 * 237.83387 * 12 10 9 26 26 H 1.08003 * 119.79719 * 180.02562 * 15 14 13 27 27 H 1.07999 * 119.85294 * 180.02562 * 16 15 14 28 28 H 1.07999 * 120.11299 * 180.02562 * 17 16 15 29 29 H 0.96708 * 114.00119 * 89.99804 * 19 18 13 30 30 H 0.97003 * 124.95182 * 180.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 1 2.9589 -3.5487 0.8153 12 6 1.4997 -5.0011 0.1252 13 6 1.8504 -5.7507 -1.1404 14 6 2.6887 -4.9564 -1.9055 15 6 3.1495 -5.4408 -3.1320 16 6 2.7737 -6.6919 -3.5737 17 6 1.9373 -7.4798 -2.8065 18 6 1.4741 -7.0080 -1.5863 19 8 0.6555 -7.7815 -0.8257 20 7 2.9470 -3.7331 -1.2847 21 1 -0.4850 0.8402 -0.0004 22 1 0.6239 -2.5567 -0.8902 23 1 0.6245 -2.5570 0.8897 24 1 0.4242 -4.8339 0.1826 25 1 1.8457 -5.5504 1.0008 26 1 3.8040 -4.8317 -3.7380 27 1 3.1355 -7.0578 -4.5233 28 1 1.6452 -8.4594 -3.1551 29 1 -0.2860 -7.6527 -1.0052 30 1 3.5089 -3.0320 -1.6504 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260957933.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:46 Heat of formation + Delta-G solvation = -43.626871 kcal Electronic energy + Delta-G solvation = -14262.625087 eV Core-core repulsion = 11828.409991 eV Total energy + Delta-G solvation = -2434.215096 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.39101 -38.72257 -36.81020 -34.98041 -32.24857 -31.65951 -29.29465 -28.34804 -25.13779 -23.05795 -22.26575 -21.74314 -19.41253 -18.54454 -17.50745 -16.70798 -16.54001 -16.38048 -15.78673 -15.32954 -14.90559 -14.21509 -13.89581 -13.62047 -13.34337 -13.10019 -12.95569 -12.85445 -12.40657 -12.28830 -12.15417 -11.81636 -11.51622 -11.12028 -10.77658 -10.61979 -9.41724 -8.24059 -8.14899 -6.33479 0.44762 0.71898 1.38097 1.39093 1.51203 2.37949 2.62794 2.86516 3.12623 3.44653 3.80458 3.92300 4.27703 4.29848 4.47957 4.62433 4.67044 4.81027 4.96724 5.05800 5.11986 5.34580 5.46142 5.58873 5.60592 5.67551 5.75848 5.88972 6.16672 6.32874 6.81416 6.93962 7.09930 7.35637 8.89256 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.047595 B = 0.006862 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.150640 B = 4079.712106 C = 4418.306319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.024 3.976 10 C 0.155 3.845 11 H 0.067 0.933 12 C -0.068 4.068 13 C -0.229 4.229 14 C 0.200 3.800 15 C -0.210 4.210 16 C -0.053 4.053 17 C -0.213 4.213 18 C 0.153 3.847 19 O -0.509 6.509 20 N -0.725 5.725 21 H 0.263 0.737 22 H -0.010 1.010 23 H 0.004 0.996 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.131 0.869 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.406 0.594 30 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.238 -12.218 -5.448 14.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.080 0.920 9 C -0.014 4.014 10 C 0.050 3.950 11 H 0.085 0.915 12 C -0.106 4.106 13 C -0.235 4.235 14 C 0.094 3.906 15 C -0.233 4.233 16 C -0.072 4.072 17 C -0.233 4.233 18 C 0.108 3.892 19 O -0.322 6.322 20 N -0.354 5.354 21 H 0.072 0.928 22 H 0.008 0.992 23 H 0.023 0.977 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.149 0.851 27 H 0.176 0.824 28 H 0.165 0.835 29 H 0.264 0.736 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.590 -12.195 -5.044 13.973 hybrid contribution -0.278 1.703 -0.084 1.727 sum 4.313 -10.493 -5.128 12.450 Atomic orbital electron populations 1.70103 1.07834 1.27671 1.51687 1.25941 0.95681 1.03264 0.94814 0.85411 0.79116 0.78962 0.77598 1.18497 1.20727 1.20543 1.21563 0.93377 0.91825 1.50283 0.91986 1.19376 0.93964 0.92878 0.95152 1.21408 0.93548 0.94652 0.85427 0.91514 1.20937 1.00478 0.93327 0.95835 1.20391 1.07087 0.96208 0.99778 1.18658 0.92809 0.86229 0.92902 1.20635 1.07852 0.99101 0.95688 1.20946 0.94718 0.91949 0.99570 1.21265 1.05069 1.02518 0.94467 1.17911 0.93964 0.87131 0.90228 1.84690 1.21591 1.63113 1.62770 1.44980 1.53405 1.15754 1.21214 0.92821 0.99187 0.97729 0.91071 0.89715 0.85110 0.82384 0.83530 0.73553 0.74930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.53 -29.23 8.96 25.60 0.23 -29.00 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.26 4.46 29.85 0.13 1.39 16 10 C 0.15 6.48 3.60 45.24 0.16 6.64 16 11 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 12 C -0.07 -2.53 6.54 30.26 0.20 -2.33 16 13 C -0.23 -8.10 6.19 -19.54 -0.12 -8.22 16 14 C 0.20 7.13 7.03 38.33 0.27 7.40 16 15 C -0.21 -6.11 10.07 22.54 0.23 -5.88 16 16 C -0.05 -1.29 10.01 22.17 0.22 -1.07 16 17 C -0.21 -5.42 10.00 22.38 0.22 -5.19 16 18 C 0.15 4.63 6.70 22.49 0.15 4.78 16 19 O -0.51 -13.55 13.46 -92.36 -1.24 -14.79 16 20 N -0.72 -28.02 6.02 -317.42 -1.91 -29.93 16 21 H 0.26 14.89 8.31 -92.70 -0.77 14.11 16 22 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 23 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 24 H 0.07 2.69 7.71 -2.39 -0.02 2.67 16 25 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 26 H 0.13 3.31 8.06 -2.91 -0.02 3.28 16 27 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 28 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 29 H 0.41 7.13 9.06 -74.05 -0.67 6.46 16 30 H 0.41 15.29 8.96 -92.71 -0.83 14.46 16 Total: -1.00 -66.04 261.17 0.98 -65.06 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.34 Total: 20.91 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 2.16 Total: -30.98 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -1.62 Total: -85.80 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -1.24 Total: -14.79 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -66.04 0.98 -65.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957933.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.438 kcal (2) G-P(sol) polarization free energy of solvation -66.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds