Wall clock time and date at job start Mon Mar 30 2020 03:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.73458 * 2 1 4 4 C 1.54373 * 110.81883 * 236.59272 * 2 1 3 5 5 C 1.51230 * 105.11794 * 215.48553 * 4 2 1 6 6 C 1.38743 * 130.68812 * 197.13374 * 5 4 2 7 7 C 1.38574 * 118.55319 * 179.66507 * 6 5 4 8 8 C 1.38233 * 118.98903 * 0.57957 * 7 6 5 9 9 N 1.31685 * 120.79989 * 359.44168 * 8 7 6 10 10 C 1.32292 * 122.03382 * 0.27323 * 9 8 7 11 11 C 1.51477 * 130.14718 * 179.97438 * 10 9 8 12 12 O 1.42902 * 110.29506 * 43.84598 * 11 10 9 13 13 C 1.50702 * 110.29467 * 281.71471 * 11 10 9 14 14 H 1.08000 * 119.99454 * 245.21094 * 13 11 10 15 15 C 1.37871 * 119.99978 * 65.21411 * 13 11 10 16 16 N 1.31515 * 120.00107 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00167 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46943 * 89.99732 * 17 15 13 19 19 H 1.48502 * 109.47600 * 209.99808 * 17 15 13 20 20 H 1.48506 * 109.47236 * 330.00259 * 17 15 13 21 21 H 1.08999 * 109.47709 * 173.58050 * 1 2 3 22 22 H 1.08993 * 109.47323 * 293.58628 * 1 2 3 23 23 H 1.09009 * 109.46833 * 53.58487 * 1 2 3 24 24 H 1.09005 * 110.30701 * 96.57895 * 4 2 1 25 25 H 1.08993 * 110.40022 * 334.44160 * 4 2 1 26 26 H 1.07997 * 120.72180 * 359.97438 * 6 5 4 27 27 H 1.07999 * 120.50610 * 180.29185 * 7 6 5 28 28 H 1.08003 * 119.60053 * 179.71154 * 8 7 6 29 29 H 0.96696 * 113.99864 * 298.54455 * 12 11 10 30 30 H 0.97001 * 120.00191 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9159 1.0194 0.0000 4 6 2.0787 -0.7945 -1.2045 5 6 3.3300 -1.4723 -0.6930 6 6 4.3920 -2.0460 -1.3770 7 6 5.4296 -2.6004 -0.6446 8 6 5.3644 -2.5731 0.7359 9 7 4.3400 -2.0205 1.3518 10 6 3.3332 -1.4758 0.6887 11 6 2.0785 -0.7993 1.2011 12 8 2.3962 0.0827 2.2797 13 6 1.0733 -1.8301 1.6461 14 1 0.1346 -1.9306 1.1214 15 6 1.3519 -2.6447 2.7229 16 7 2.4947 -2.5219 3.3621 17 14 0.1056 -3.9220 3.2750 18 1 0.3565 -5.1994 2.5605 19 1 0.2348 -4.1396 4.7383 20 1 -1.2652 -3.4424 2.9650 21 1 -0.3634 -1.0212 -0.1149 22 1 -0.3633 0.4112 0.9417 23 1 -0.3633 0.6101 -0.8271 24 1 2.3226 -0.1185 -2.0241 25 1 1.3523 -1.5383 -1.5317 26 1 4.4121 -2.0559 -2.4568 27 1 6.2741 -3.0510 -1.1447 28 1 6.1654 -3.0065 1.3165 29 1 2.7849 -0.3587 3.0472 30 1 2.6909 -3.0953 4.1195 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260961414.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:08 Heat of formation + Delta-G solvation = -11.608923 kcal Electronic energy + Delta-G solvation = -15250.651341 eV Core-core repulsion = 12817.824647 eV Total energy + Delta-G solvation = -2432.826693 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.80801 -36.62693 -33.85500 -32.02706 -31.23775 -30.13024 -26.83732 -25.62452 -23.98714 -21.52393 -20.84020 -19.04526 -16.84836 -16.04000 -15.48662 -15.00472 -14.43450 -14.02297 -13.55678 -13.04935 -12.62855 -12.31816 -12.11420 -11.91592 -11.46079 -11.25990 -11.18365 -10.88269 -10.54509 -10.41135 -10.24458 -9.68696 -9.46553 -8.86598 -8.57421 -8.46388 -7.84707 -7.65758 -6.06817 -4.21939 2.08479 2.24539 3.25542 3.32779 3.35072 4.34229 4.83067 5.04493 5.17212 5.46108 5.56411 5.65673 5.74373 5.82402 6.01252 6.10930 6.27478 6.41353 6.52768 6.55673 6.66660 6.77899 6.85823 7.01332 7.13792 7.14803 7.37456 7.71841 7.86898 8.11417 8.76661 9.24926 9.45174 9.60168 10.93102 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.014884 C = 0.011543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.786844 B = 1880.752941 C = 2425.182567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.076 4.076 3 H 0.069 0.931 4 C -0.062 4.062 5 C -0.174 4.174 6 C -0.080 4.080 7 C -0.209 4.209 8 C 0.086 3.914 9 N -0.429 5.429 10 C 0.157 3.843 11 C 0.301 3.699 12 O -0.586 6.586 13 C -0.547 4.547 14 H 0.077 0.923 15 C 0.072 3.928 16 N -0.848 5.848 17 Si 0.893 3.107 18 H -0.282 1.282 19 H -0.285 1.285 20 H -0.272 1.272 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.033 0.967 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.139 0.861 29 H 0.388 0.612 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.489 0.807 -6.874 7.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.095 4.095 3 H 0.087 0.913 4 C -0.099 4.099 5 C -0.176 4.176 6 C -0.105 4.105 7 C -0.229 4.229 8 C -0.073 4.073 9 N -0.137 5.137 10 C 0.019 3.981 11 C 0.260 3.740 12 O -0.396 6.396 13 C -0.585 4.585 14 H 0.095 0.905 15 C -0.135 4.135 16 N -0.484 5.484 17 Si 0.721 3.279 18 H -0.208 1.208 19 H -0.210 1.210 20 H -0.196 1.196 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.156 0.844 29 H 0.240 0.760 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.360 1.195 -6.184 6.443 hybrid contribution -0.075 -1.602 -0.305 1.633 sum 1.285 -0.408 -6.489 6.628 Atomic orbital electron populations 1.21716 0.94399 1.01565 1.00419 1.21706 0.96117 0.98133 0.93569 0.91251 1.20899 0.93648 0.97885 0.97487 1.21476 0.96917 1.01989 0.97251 1.20791 0.93371 0.97325 0.99058 1.21795 1.00001 1.05030 0.96085 1.22690 0.96356 0.96801 0.91431 1.67206 0.99617 1.06291 1.40553 1.23490 0.93219 0.91375 0.90032 1.18209 0.85646 0.86011 0.84149 1.86098 1.85004 1.39134 1.29403 1.21680 1.02959 1.19060 1.14804 0.90525 1.25147 0.95106 0.96837 0.96383 1.69741 1.20834 1.38300 1.19551 0.86579 0.81837 0.81590 0.77912 1.20838 1.21024 1.19647 0.91703 0.92078 0.94802 0.92120 0.90475 0.86700 0.86397 0.84411 0.75995 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.13 37.16 0.30 -2.04 16 2 C -0.08 -1.61 3.29 -89.19 -0.29 -1.91 16 3 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 4 C -0.06 -1.17 6.31 -26.90 -0.17 -1.34 16 5 C -0.17 -3.75 6.16 -104.20 -0.64 -4.39 16 6 C -0.08 -1.49 10.17 -39.27 -0.40 -1.89 16 7 C -0.21 -3.79 10.12 -39.46 -0.40 -4.19 16 8 C 0.09 1.78 11.18 -17.62 -0.20 1.58 16 9 N -0.43 -10.74 9.04 -9.19 -0.08 -10.82 16 10 C 0.16 3.93 5.81 -82.04 -0.48 3.45 16 11 C 0.30 7.62 0.83 -91.84 -0.08 7.54 16 12 O -0.59 -15.89 13.03 -35.23 -0.46 -16.35 16 13 C -0.55 -14.54 7.65 -34.44 -0.26 -14.81 16 14 H 0.08 1.96 5.13 -52.49 -0.27 1.69 16 15 C 0.07 1.93 5.27 -17.82 -0.09 1.84 16 16 N -0.85 -23.33 9.86 55.43 0.55 -22.78 16 17 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H 0.06 1.25 5.99 -51.93 -0.31 0.94 16 22 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 23 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.08 1.41 7.79 -51.93 -0.40 1.00 16 26 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 27 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 28 H 0.14 2.44 8.06 -52.48 -0.42 2.02 16 29 H 0.39 10.88 7.02 45.56 0.32 11.20 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 248.66 15.07 3.75 3.75 Total: -1.00 -29.45 248.66 -6.74 -36.18 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -2.76 Total: 10.30 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -2.71 Total: -16.16 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.46 Total: -33.60 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.46 Total: -16.35 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.45 -6.74 -36.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961414.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.572 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds