Wall clock time and date at job start Mon Mar 30 2020 03:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.73458 * 2 1 4 4 C 1.54373 * 110.81883 * 236.59272 * 2 1 3 5 5 C 1.51230 * 105.11794 * 215.48553 * 4 2 1 6 6 C 1.38743 * 130.68812 * 197.13374 * 5 4 2 7 7 C 1.38574 * 118.55319 * 179.66507 * 6 5 4 8 8 C 1.38233 * 118.98903 * 0.57957 * 7 6 5 9 9 N 1.31685 * 120.79989 * 359.44168 * 8 7 6 10 10 C 1.32292 * 122.03382 * 0.27323 * 9 8 7 11 11 C 1.51477 * 130.14718 * 179.97438 * 10 9 8 12 12 O 1.42902 * 110.29506 * 43.84598 * 11 10 9 13 13 C 1.50702 * 110.29467 * 281.71471 * 11 10 9 14 14 H 1.08000 * 119.99454 * 245.21094 * 13 11 10 15 15 C 1.37871 * 119.99978 * 65.21411 * 13 11 10 16 16 N 1.31515 * 120.00107 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00167 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46943 * 89.99732 * 17 15 13 19 19 H 1.48502 * 109.47600 * 209.99808 * 17 15 13 20 20 H 1.48506 * 109.47236 * 330.00259 * 17 15 13 21 21 H 1.08999 * 109.47709 * 173.58050 * 1 2 3 22 22 H 1.08993 * 109.47323 * 293.58628 * 1 2 3 23 23 H 1.09009 * 109.46833 * 53.58487 * 1 2 3 24 24 H 1.09005 * 110.30701 * 96.57895 * 4 2 1 25 25 H 1.08993 * 110.40022 * 334.44160 * 4 2 1 26 26 H 1.07997 * 120.72180 * 359.97438 * 6 5 4 27 27 H 1.07999 * 120.50610 * 180.29185 * 7 6 5 28 28 H 1.08003 * 119.60053 * 179.71154 * 8 7 6 29 29 H 0.96696 * 113.99864 * 298.54455 * 12 11 10 30 30 H 0.97001 * 120.00191 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9159 1.0194 0.0000 4 6 2.0787 -0.7945 -1.2045 5 6 3.3300 -1.4723 -0.6930 6 6 4.3920 -2.0460 -1.3770 7 6 5.4296 -2.6004 -0.6446 8 6 5.3644 -2.5731 0.7359 9 7 4.3400 -2.0205 1.3518 10 6 3.3332 -1.4758 0.6887 11 6 2.0785 -0.7993 1.2011 12 8 2.3962 0.0827 2.2797 13 6 1.0733 -1.8301 1.6461 14 1 0.1346 -1.9306 1.1214 15 6 1.3519 -2.6447 2.7229 16 7 2.4947 -2.5219 3.3621 17 14 0.1056 -3.9220 3.2750 18 1 0.3565 -5.1994 2.5605 19 1 0.2348 -4.1396 4.7383 20 1 -1.2652 -3.4424 2.9650 21 1 -0.3634 -1.0212 -0.1149 22 1 -0.3633 0.4112 0.9417 23 1 -0.3633 0.6101 -0.8271 24 1 2.3226 -0.1185 -2.0241 25 1 1.3523 -1.5383 -1.5317 26 1 4.4121 -2.0559 -2.4568 27 1 6.2741 -3.0510 -1.1447 28 1 6.1654 -3.0065 1.3165 29 1 2.7849 -0.3587 3.0472 30 1 2.6909 -3.0953 4.1195 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260961414.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:08 Heat of formation + Delta-G solvation = -31.659174 kcal Electronic energy + Delta-G solvation = -15251.520785 eV Core-core repulsion = 12817.824647 eV Total energy + Delta-G solvation = -2433.696137 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.42833 -38.33571 -35.66971 -34.05398 -32.84547 -31.68710 -28.66794 -27.17374 -25.80535 -23.10159 -22.43085 -20.78849 -18.74771 -17.79205 -17.18818 -16.73858 -16.07402 -15.68661 -15.32717 -14.71290 -14.27599 -13.97489 -13.64012 -13.54785 -13.22793 -13.05572 -12.83870 -12.67397 -12.31358 -12.08574 -11.90677 -11.47091 -11.21136 -10.61929 -10.42317 -10.29610 -9.50717 -9.31987 -8.05148 -6.26172 0.50193 0.72808 1.38350 1.40654 1.49490 2.40252 3.06975 3.29286 3.54501 3.92535 3.99535 4.12282 4.26121 4.38529 4.48251 4.63686 4.76872 4.88815 4.98856 5.01937 5.11797 5.23649 5.32607 5.42247 5.55832 5.60949 5.64512 5.84373 6.16673 6.19256 6.76544 7.37709 7.48948 7.67540 8.92448 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.014884 C = 0.011543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.786844 B = 1880.752941 C = 2425.182567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 H 0.066 0.934 4 C -0.053 4.053 5 C -0.185 4.185 6 C -0.078 4.078 7 C -0.190 4.190 8 C 0.061 3.939 9 N -0.475 5.475 10 C 0.112 3.888 11 C 0.278 3.722 12 O -0.601 6.601 13 C -0.560 4.560 14 H 0.080 0.920 15 C 0.024 3.976 16 N -0.870 5.870 17 Si 0.951 3.049 18 H -0.284 1.284 19 H -0.285 1.285 20 H -0.264 1.264 21 H 0.058 0.942 22 H 0.040 0.960 23 H 0.072 0.928 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.160 0.840 27 H 0.164 0.836 28 H 0.158 0.842 29 H 0.377 0.623 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 0.276 -9.456 9.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.099 4.099 3 H 0.085 0.915 4 C -0.090 4.090 5 C -0.188 4.188 6 C -0.103 4.103 7 C -0.210 4.210 8 C -0.097 4.097 9 N -0.183 5.183 10 C -0.026 4.026 11 C 0.238 3.762 12 O -0.410 6.410 13 C -0.598 4.598 14 H 0.098 0.902 15 C -0.180 4.180 16 N -0.507 5.507 17 Si 0.777 3.223 18 H -0.211 1.211 19 H -0.211 1.211 20 H -0.188 1.188 21 H 0.077 0.923 22 H 0.059 0.941 23 H 0.091 0.909 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.177 0.823 27 H 0.182 0.818 28 H 0.175 0.825 29 H 0.227 0.773 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.486 0.674 -8.785 8.935 hybrid contribution -0.021 -1.420 0.462 1.494 sum 1.466 -0.746 -8.323 8.484 Atomic orbital electron populations 1.21633 0.92994 1.01773 1.00956 1.21788 0.97333 0.97755 0.92983 0.91531 1.20902 0.92681 0.98228 0.97226 1.21834 0.98525 1.02293 0.96109 1.21315 0.92045 0.95699 1.01289 1.22265 1.00872 1.02896 0.94948 1.23177 0.96059 0.97086 0.93417 1.67041 1.00966 1.07651 1.42663 1.23401 0.93824 0.93481 0.91905 1.18664 0.86532 0.86398 0.84618 1.86074 1.85039 1.40078 1.29816 1.22009 1.03592 1.19224 1.14986 0.90201 1.25852 0.96609 0.98692 0.96802 1.69887 1.22170 1.38894 1.19754 0.85685 0.80197 0.79232 0.77215 1.21065 1.21088 1.18819 0.92338 0.94061 0.90929 0.88503 0.89631 0.82261 0.81806 0.82487 0.77285 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 8.13 71.98 0.58 -3.68 16 2 C -0.08 -3.30 3.29 -9.87 -0.03 -3.33 16 3 H 0.07 2.73 8.11 -2.39 -0.02 2.71 16 4 C -0.05 -1.87 6.31 30.48 0.19 -1.68 16 5 C -0.19 -7.62 6.16 -19.59 -0.12 -7.74 16 6 C -0.08 -2.61 10.17 22.47 0.23 -2.38 16 7 C -0.19 -6.22 10.12 22.35 0.23 -6.00 16 8 C 0.06 2.45 11.18 84.71 0.95 3.40 16 9 N -0.48 -24.09 9.04 -182.98 -1.65 -25.75 16 10 C 0.11 5.60 5.81 42.72 0.25 5.85 16 11 C 0.28 14.32 0.83 -11.58 -0.01 14.31 16 12 O -0.60 -34.02 13.03 -148.98 -1.94 -35.96 16 13 C -0.56 -30.25 7.65 25.60 0.20 -30.05 16 14 H 0.08 4.12 5.13 -2.91 -0.01 4.10 16 15 C 0.02 1.33 5.27 84.65 0.45 1.77 16 16 N -0.87 -49.56 9.86 21.45 0.21 -49.35 16 17 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H 0.06 2.19 5.99 -2.39 -0.01 2.17 16 22 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 24 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 25 H 0.09 2.87 7.79 -2.39 -0.02 2.85 16 26 H 0.16 3.88 8.06 -2.91 -0.02 3.85 16 27 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 28 H 0.16 5.42 8.06 -2.91 -0.02 5.39 16 29 H 0.38 22.42 7.02 -74.06 -0.52 21.90 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -65.89 248.66 2.18 -63.71 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.63 Total: 31.18 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 2.91 Total: -29.52 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -1.44 Total: -75.10 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.94 Total: -35.96 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -65.89 2.18 -63.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961414.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.050 kcal (2) G-P(sol) polarization free energy of solvation -65.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds