Wall clock time and date at job start Mon Mar 30 2020 03:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.88550 * 2 1 4 4 C 1.54368 * 110.82567 * 123.52180 * 2 1 3 5 5 C 1.51217 * 105.11946 * 91.92414 * 4 2 1 6 6 C 1.38744 * 130.69304 * 197.15226 * 5 4 2 7 7 C 1.38579 * 118.55484 * 179.97438 * 6 5 4 8 8 C 1.38221 * 118.99153 * 359.97438 * 7 6 5 9 9 N 1.31688 * 120.80663 * 0.02562 * 8 7 6 10 10 C 1.32299 * 122.02679 * 0.02562 * 9 8 7 11 11 C 1.51477 * 130.14153 * 179.97438 * 10 9 8 12 12 O 1.42897 * 110.29864 * 43.77049 * 11 10 9 13 13 C 1.50695 * 110.29370 * 281.73279 * 11 10 9 14 14 H 1.08004 * 120.00546 * 241.73414 * 13 11 10 15 15 C 1.37885 * 119.99721 * 61.45665 * 13 11 10 16 16 N 1.31514 * 120.00035 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99853 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46986 * 90.00256 * 17 15 13 19 19 H 1.48496 * 109.47029 * 210.00273 * 17 15 13 20 20 H 1.48499 * 109.47352 * 330.00102 * 17 15 13 21 21 H 1.08998 * 109.47181 * 183.51369 * 1 2 3 22 22 H 1.08996 * 109.47055 * 303.51282 * 1 2 3 23 23 H 1.09000 * 109.47070 * 63.51024 * 1 2 3 24 24 H 1.08998 * 110.30778 * 333.01622 * 4 2 1 25 25 H 1.08997 * 110.31027 * 210.83712 * 4 2 1 26 26 H 1.08000 * 120.71999 * 0.02562 * 6 5 4 27 27 H 1.08004 * 120.50254 * 180.02562 * 7 6 5 28 28 H 1.07998 * 119.59697 * 180.02562 * 8 7 6 29 29 H 0.96698 * 113.99458 * 297.24667 * 12 11 10 30 30 H 0.97000 * 119.99706 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0788 -0.7968 1.2029 5 6 2.2649 -2.2071 0.6899 6 6 2.4231 -3.4045 1.3727 7 6 2.5762 -4.5702 0.6390 8 6 2.5654 -4.4992 -0.7413 9 7 2.4129 -3.3447 -1.3562 10 6 2.2648 -2.2102 -0.6918 11 6 2.0789 -0.7964 -1.2029 12 8 1.1402 -0.7782 -2.2802 13 6 3.3992 -0.2249 -1.6513 14 1 3.8024 0.6503 -1.1635 15 6 4.0952 -0.8226 -2.6805 16 7 3.6066 -1.8912 -3.2713 17 14 5.7315 -0.1137 -3.2369 18 1 6.8318 -0.7400 -2.4607 19 1 5.9253 -0.3914 -4.6827 20 1 5.7382 1.3537 -3.0094 21 1 -0.3633 -1.0257 0.0630 22 1 -0.3633 0.5674 0.8568 23 1 -0.3633 0.4584 -0.9198 24 1 1.3619 -0.7842 2.0238 25 1 3.0337 -0.3829 1.5269 26 1 2.4260 -3.4277 2.4524 27 1 2.7013 -5.5197 1.1382 28 1 2.6835 -5.4016 -1.3227 29 1 1.4222 -1.2818 -3.0560 30 1 4.0961 -2.3115 -3.9956 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260961417.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:11 Heat of formation + Delta-G solvation = -34.762123 kcal Electronic energy + Delta-G solvation = -15271.623499 eV Core-core repulsion = 12837.792807 eV Total energy + Delta-G solvation = -2433.830691 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.43624 -38.27040 -35.64894 -34.12019 -32.77684 -31.33127 -28.87665 -27.48374 -25.49730 -23.35636 -22.40733 -20.49472 -18.97405 -17.79628 -17.12726 -16.71187 -15.99358 -15.73976 -15.20595 -14.71784 -14.14370 -14.08938 -13.61264 -13.49765 -13.23217 -13.19775 -12.80232 -12.67176 -12.35722 -12.28614 -11.90829 -11.62275 -11.17668 -10.63280 -10.47291 -10.28650 -9.47655 -9.30890 -8.06349 -6.32014 0.52520 0.75276 1.36678 1.38985 1.48183 2.38078 3.05462 3.30273 3.56515 3.91226 4.05107 4.15288 4.27146 4.36135 4.42768 4.61691 4.71286 4.87105 4.95724 5.00138 5.14026 5.15703 5.33463 5.45558 5.51461 5.62173 5.66266 5.80179 6.13760 6.18637 6.69907 7.33993 7.44914 7.70550 8.88024 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.025428 B = 0.014536 C = 0.011542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.895551 B = 1925.761848 C = 2425.318027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 H 0.080 0.920 4 C -0.055 4.055 5 C -0.183 4.183 6 C -0.080 4.080 7 C -0.191 4.191 8 C 0.059 3.941 9 N -0.468 5.468 10 C 0.119 3.881 11 C 0.282 3.718 12 O -0.590 6.590 13 C -0.570 4.570 14 H 0.059 0.941 15 C 0.029 3.971 16 N -0.860 5.860 17 Si 0.951 3.049 18 H -0.283 1.283 19 H -0.281 1.281 20 H -0.267 1.267 21 H 0.034 0.966 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.158 0.842 27 H 0.163 0.837 28 H 0.157 0.843 29 H 0.372 0.628 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -2.115 8.961 9.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.100 4.100 3 H 0.098 0.902 4 C -0.092 4.092 5 C -0.186 4.186 6 C -0.106 4.106 7 C -0.211 4.211 8 C -0.099 4.099 9 N -0.176 5.176 10 C -0.019 4.019 11 C 0.241 3.759 12 O -0.398 6.398 13 C -0.608 4.608 14 H 0.077 0.923 15 C -0.176 4.176 16 N -0.495 5.495 17 Si 0.776 3.224 18 H -0.209 1.209 19 H -0.207 1.207 20 H -0.192 1.192 21 H 0.053 0.947 22 H 0.096 0.904 23 H 0.065 0.935 24 H 0.117 0.883 25 H 0.098 0.902 26 H 0.176 0.824 27 H 0.181 0.819 28 H 0.174 0.826 29 H 0.221 0.779 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.365 -1.868 8.305 8.835 hybrid contribution 1.541 -0.337 -0.369 1.620 sum -0.824 -2.205 7.936 8.278 Atomic orbital electron populations 1.21430 0.93780 1.00623 1.01501 1.21892 0.96483 0.98705 0.92904 0.90160 1.20894 1.01649 0.89270 0.97427 1.21789 1.03149 0.97412 0.96203 1.21297 0.97389 0.90690 1.01221 1.22254 1.03806 0.99980 0.95011 1.23169 0.97517 0.95862 0.93337 1.67081 1.09863 0.98231 1.42413 1.23264 0.91559 0.95449 0.91631 1.18525 0.87188 0.85324 0.84829 1.86096 1.48420 1.76639 1.28606 1.21766 1.06428 1.13669 1.18946 0.92257 1.25805 1.00707 0.94659 0.96466 1.69999 1.38938 1.18429 1.22146 0.85690 0.80187 0.79070 0.77421 1.20918 1.20677 1.19188 0.94720 0.90421 0.93452 0.88319 0.90170 0.82430 0.81942 0.82580 0.77851 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.25 8.59 71.98 0.62 -3.63 16 2 C -0.08 -3.35 3.14 -9.87 -0.03 -3.38 16 3 H 0.08 3.26 7.74 -2.39 -0.02 3.24 16 4 C -0.06 -1.97 6.30 30.48 0.19 -1.78 16 5 C -0.18 -7.55 6.16 -19.59 -0.12 -7.67 16 6 C -0.08 -2.72 10.17 22.47 0.23 -2.49 16 7 C -0.19 -6.30 10.12 22.35 0.23 -6.08 16 8 C 0.06 2.40 11.18 84.71 0.95 3.35 16 9 N -0.47 -23.61 8.72 -182.98 -1.60 -25.21 16 10 C 0.12 5.93 5.74 42.72 0.25 6.17 16 11 C 0.28 14.45 0.75 -11.58 -0.01 14.44 16 12 O -0.59 -32.35 11.55 -148.98 -1.72 -34.07 16 13 C -0.57 -31.55 8.24 25.60 0.21 -31.34 16 14 H 0.06 3.22 7.58 -2.91 -0.02 3.20 16 15 C 0.03 1.58 5.25 84.66 0.44 2.02 16 16 N -0.86 -48.66 9.70 21.45 0.21 -48.45 16 17 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 22 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.05 1.86 7.49 -2.39 -0.02 1.84 16 24 H 0.10 2.79 7.91 -2.39 -0.02 2.77 16 25 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 27 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16 28 H 0.16 5.41 8.06 -2.91 -0.02 5.39 16 29 H 0.37 21.66 7.28 -74.06 -0.54 21.12 16 30 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -65.27 251.36 2.48 -62.79 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.61 Total: 29.45 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 2.95 Total: -30.39 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -1.39 Total: -73.66 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -1.72 Total: -34.07 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -65.27 2.48 -62.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961417.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.028 kcal (2) G-P(sol) polarization free energy of solvation -65.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds