Wall clock time and date at job start Mon Mar 30 2020 03:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.88552 * 2 1 4 4 C 1.54516 * 110.90821 * 236.44569 * 2 1 3 5 5 C 1.51221 * 105.16299 * 215.59000 * 4 2 1 6 6 C 1.38741 * 130.69278 * 197.08365 * 5 4 2 7 7 C 1.38578 * 118.55682 * 180.02562 * 6 5 4 8 8 C 1.38227 * 118.98994 * 359.97438 * 7 6 5 9 9 N 1.31693 * 120.80306 * 0.02562 * 8 7 6 10 10 C 1.32287 * 122.02965 * 0.02562 * 9 8 7 11 11 C 1.51479 * 130.14461 * 179.97438 * 10 9 8 12 12 O 1.42908 * 110.29329 * 281.83046 * 11 10 9 13 13 C 1.50701 * 110.29801 * 43.86417 * 11 10 9 14 14 H 1.08002 * 119.99761 * 117.24303 * 13 11 10 15 15 C 1.37871 * 119.99694 * 297.52866 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 H 1.08994 * 109.47408 * 296.48818 * 1 2 3 22 22 H 1.09007 * 109.47089 * 56.48944 * 1 2 3 23 23 H 1.09005 * 109.47214 * 176.48705 * 1 2 3 24 24 H 1.09002 * 110.34301 * 96.64351 * 4 2 1 25 25 H 1.08991 * 110.31870 * 334.53542 * 4 2 1 26 26 H 1.07998 * 120.72029 * 0.02562 * 6 5 4 27 27 H 1.08001 * 120.50511 * 179.97438 * 7 6 5 28 28 H 1.08007 * 119.59991 * 180.02562 * 8 7 6 29 29 H 0.96701 * 113.99366 * 62.75360 * 12 11 10 30 30 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0814 -0.7978 -1.2029 5 6 3.3313 -1.4758 -0.6883 6 6 4.3936 -2.0522 -1.3697 7 6 5.4260 -2.6128 -0.6347 8 6 5.3617 -2.5776 0.7456 9 7 4.3375 -2.0218 1.3591 10 6 3.3323 -1.4772 0.6935 11 6 2.0781 -0.7974 1.2028 12 8 1.1239 -1.7723 1.6285 13 6 2.4133 0.1352 2.3381 14 1 2.2355 1.1956 2.2363 15 6 2.9524 -0.3646 3.5045 16 7 3.1689 -1.6558 3.6285 17 14 3.3751 0.7924 4.9088 18 1 2.1995 0.9333 5.8051 19 1 4.5199 0.2407 5.6772 20 1 3.7419 2.1229 4.3608 21 1 -0.3634 0.4583 0.9197 22 1 -0.3634 0.5674 -0.8569 23 1 -0.3634 -1.0258 -0.0630 24 1 2.3271 -0.1241 -2.0238 25 1 1.3544 -1.5415 -1.5291 26 1 4.4154 -2.0638 -2.4494 27 1 6.2681 -3.0702 -1.1328 28 1 6.1612 -3.0113 1.3281 29 1 1.4226 -2.3176 2.3692 30 1 3.5486 -2.0074 4.4489 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260961419.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:14 Heat of formation + Delta-G solvation = -29.070724 kcal Electronic energy + Delta-G solvation = -15224.047699 eV Core-core repulsion = 12790.463805 eV Total energy + Delta-G solvation = -2433.583894 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.40018 -38.30640 -35.49722 -34.01217 -32.81077 -31.60080 -28.93264 -27.26897 -25.52460 -23.07302 -22.41136 -20.61800 -19.00574 -17.83712 -17.04141 -16.60429 -16.00689 -15.73036 -15.03804 -14.87288 -14.30424 -14.02984 -13.61022 -13.54580 -13.15152 -13.12907 -12.76484 -12.69197 -12.29355 -12.23388 -11.84582 -11.72545 -11.06660 -10.47459 -10.39179 -10.31331 -9.45724 -9.36063 -8.02096 -6.18427 0.47879 0.73401 1.40099 1.41121 1.49307 2.44490 3.11220 3.33375 3.51534 3.92496 4.05825 4.19218 4.26743 4.31143 4.43187 4.61092 4.77664 4.86467 4.91407 5.03376 5.10793 5.20227 5.36137 5.45911 5.53033 5.61100 5.72188 5.86376 6.17218 6.20001 6.76940 7.37497 7.50668 7.73054 8.97920 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.025515 B = 0.014914 C = 0.010683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.113455 B = 1876.986487 C = 2620.427718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.080 4.080 3 H 0.074 0.926 4 C -0.060 4.060 5 C -0.184 4.184 6 C -0.081 4.081 7 C -0.183 4.183 8 C 0.054 3.946 9 N -0.453 5.453 10 C 0.107 3.893 11 C 0.281 3.719 12 O -0.583 6.583 13 C -0.580 4.580 14 H 0.048 0.952 15 C 0.043 3.957 16 N -0.853 5.853 17 Si 0.945 3.055 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.277 1.277 21 H 0.039 0.961 22 H 0.074 0.926 23 H 0.050 0.950 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.160 0.840 27 H 0.165 0.835 28 H 0.155 0.845 29 H 0.371 0.629 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 -0.489 -9.338 9.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 H 0.092 0.908 4 C -0.098 4.098 5 C -0.186 4.186 6 C -0.106 4.106 7 C -0.203 4.203 8 C -0.104 4.104 9 N -0.161 5.161 10 C -0.032 4.032 11 C 0.241 3.759 12 O -0.390 6.390 13 C -0.618 4.618 14 H 0.066 0.934 15 C -0.163 4.163 16 N -0.488 5.488 17 Si 0.772 3.228 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.202 1.202 21 H 0.058 0.942 22 H 0.092 0.908 23 H 0.069 0.931 24 H 0.114 0.886 25 H 0.102 0.898 26 H 0.177 0.823 27 H 0.182 0.818 28 H 0.172 0.828 29 H 0.220 0.780 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.271 -0.374 -8.775 8.874 hybrid contribution 0.919 0.178 0.899 1.298 sum 2.190 -0.196 -7.876 8.177 Atomic orbital electron populations 1.21344 0.93009 1.01507 1.00981 1.21872 0.97370 0.97728 0.92876 0.90779 1.21026 0.92705 0.98352 0.97689 1.21999 0.98607 1.01670 0.96354 1.21311 0.92047 0.95987 1.01277 1.22309 1.00690 1.02312 0.94970 1.23267 0.96402 0.97419 0.93339 1.67284 1.00275 1.06413 1.42091 1.23367 0.95829 0.92826 0.91142 1.18320 0.80851 0.84815 0.91871 1.86128 1.45459 1.52482 1.54952 1.21699 1.45475 0.93854 1.00762 0.93351 1.25551 0.94187 0.96395 1.00126 1.69825 1.40893 1.12294 1.25795 0.85790 0.77671 0.79428 0.79938 1.20090 1.21083 1.20243 0.94158 0.90758 0.93092 0.88625 0.89796 0.82288 0.81797 0.82768 0.77994 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.08 8.59 71.98 0.62 -3.46 16 2 C -0.08 -3.31 3.14 -9.81 -0.03 -3.34 16 3 H 0.07 3.09 7.79 -2.39 -0.02 3.07 16 4 C -0.06 -2.13 6.33 30.53 0.19 -1.94 16 5 C -0.18 -7.49 6.16 -19.59 -0.12 -7.61 16 6 C -0.08 -2.66 10.17 22.47 0.23 -2.44 16 7 C -0.18 -5.93 10.12 22.35 0.23 -5.70 16 8 C 0.05 2.19 11.18 84.71 0.95 3.14 16 9 N -0.45 -23.01 8.02 -182.97 -1.47 -24.47 16 10 C 0.11 5.33 6.05 42.72 0.26 5.59 16 11 C 0.28 14.46 0.76 -11.57 -0.01 14.45 16 12 O -0.58 -31.27 11.51 -148.98 -1.72 -32.99 16 13 C -0.58 -32.78 8.23 25.60 0.21 -32.57 16 14 H 0.05 2.73 7.62 -2.91 -0.02 2.71 16 15 C 0.04 2.41 5.11 84.65 0.43 2.84 16 16 N -0.85 -48.24 9.37 21.45 0.20 -48.04 16 17 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 23 H 0.05 1.92 7.41 -2.38 -0.02 1.90 16 24 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.08 2.77 7.84 -2.39 -0.02 2.75 16 26 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 27 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 28 H 0.16 5.40 8.06 -2.91 -0.02 5.37 16 29 H 0.37 21.14 7.19 -74.06 -0.53 20.61 16 30 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -65.56 250.34 2.61 -62.95 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.61 Total: 26.85 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 2.95 Total: -31.04 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.27 Total: -72.52 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.72 Total: -32.99 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.56 2.61 -62.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961419.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.881 kcal (2) G-P(sol) polarization free energy of solvation -65.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds