Wall clock time and date at job start Mon Mar 30 2020 02:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00196 * 2 1 4 4 H 1.48498 * 109.47038 * 269.99679 * 3 2 1 5 5 H 1.48494 * 109.46950 * 29.99776 * 3 2 1 6 6 H 1.48500 * 109.46970 * 150.00012 * 3 2 1 7 7 C 1.37884 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47121 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.84338 * 56.95031 * 10 9 7 12 12 C 1.54596 * 110.78406 * 180.35816 * 10 9 7 13 13 C 1.51577 * 102.88337 * 143.82304 * 12 10 9 14 14 C 1.38079 * 131.51039 * 163.67015 * 13 12 10 15 15 C 1.38241 * 120.17772 * 180.69305 * 14 13 12 16 16 C 1.38316 * 119.92648 * 0.02562 * 15 14 13 17 17 C 1.38294 * 120.19379 * 359.85799 * 16 15 14 18 18 O 1.36017 * 119.94147 * 180.02562 * 17 16 15 19 19 C 1.38762 * 107.98560 * 344.05035 * 13 12 10 20 20 N 1.40332 * 110.96213 * 359.21020 * 19 13 12 21 21 H 0.97002 * 120.00023 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47471 * 59.99527 * 9 7 2 23 23 H 1.08996 * 109.47446 * 299.99912 * 9 7 2 24 24 H 1.09007 * 110.72947 * 25.47726 * 12 10 9 25 25 H 1.08998 * 110.72890 * 262.17488 * 12 10 9 26 26 H 1.07998 * 119.90527 * 0.70311 * 14 13 12 27 27 H 1.08000 * 120.03431 * 179.97438 * 15 14 13 28 28 H 1.07997 * 119.90573 * 179.87660 * 16 15 14 29 29 H 0.96698 * 113.99854 * 269.97372 * 18 17 16 30 30 H 1.00901 * 110.99974 * 140.17496 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9195 -3.5959 0.8544 12 6 1.5031 -5.0183 -0.0085 13 6 2.3913 -5.8838 -0.8800 14 6 2.4553 -7.2530 -1.0466 15 6 3.3833 -7.8054 -1.9097 16 6 4.2504 -6.9846 -2.6079 17 6 4.1900 -5.6123 -2.4476 18 8 5.0449 -4.8100 -3.1373 19 6 3.2509 -5.0482 -1.5789 20 7 3.0062 -3.7020 -1.2673 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8902 24 1 0.5126 -4.9131 -0.4513 25 1 1.4348 -5.4274 0.9995 26 1 1.7785 -7.8940 -0.5013 27 1 3.4316 -8.8766 -2.0379 28 1 4.9765 -7.4166 -3.2806 29 1 5.8745 -4.6294 -2.6745 30 1 3.8699 -3.1867 -1.1869 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260968930.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:31 Heat of formation + Delta-G solvation = -42.725841 kcal Electronic energy + Delta-G solvation = -14253.891075 eV Core-core repulsion = 11819.715050 eV Total energy + Delta-G solvation = -2434.176024 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.54973 -38.63798 -36.98315 -35.02510 -32.22725 -31.66319 -29.20426 -28.42319 -25.19036 -22.92778 -22.28935 -21.46501 -19.14827 -18.59359 -17.56719 -17.11845 -16.63942 -16.23789 -15.83959 -15.07397 -14.66280 -14.24272 -13.94958 -13.55199 -13.26431 -13.10519 -12.93699 -12.81872 -12.49888 -12.33007 -12.21678 -11.75532 -11.48274 -11.12894 -10.89570 -10.57172 -9.52723 -8.53652 -8.18789 -6.27968 0.35536 0.46996 1.39408 1.41389 1.51066 2.40880 2.71902 2.95204 3.17491 3.35877 3.69513 3.89259 4.15553 4.25714 4.36332 4.49267 4.62477 4.79310 4.93679 5.02214 5.08131 5.31655 5.38783 5.46051 5.54900 5.61138 5.78818 5.87222 6.14311 6.22750 6.37832 6.84769 6.92465 7.39515 8.93330 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.044063 B = 0.007132 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.295884 B = 3925.264856 C = 4444.881599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.043 3.957 10 C 0.094 3.906 11 H 0.062 0.938 12 C -0.078 4.078 13 C -0.153 4.153 14 C -0.088 4.088 15 C -0.135 4.135 16 C -0.118 4.118 17 C 0.053 3.947 18 O -0.507 6.507 19 C 0.059 3.941 20 N -0.609 5.609 21 H 0.262 0.738 22 H -0.009 1.009 23 H 0.008 0.992 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.146 0.854 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.398 0.602 30 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.404 -14.740 -1.126 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.564 4.564 8 H 0.077 0.923 9 C 0.005 3.995 10 C -0.014 4.014 11 H 0.080 0.920 12 C -0.116 4.116 13 C -0.157 4.157 14 C -0.106 4.106 15 C -0.154 4.154 16 C -0.137 4.137 17 C 0.006 3.994 18 O -0.318 6.318 19 C -0.043 4.043 20 N -0.231 5.231 21 H 0.071 0.929 22 H 0.009 0.991 23 H 0.026 0.974 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.164 0.836 27 H 0.180 0.820 28 H 0.170 0.830 29 H 0.255 0.745 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.267 -14.396 -1.938 16.713 hybrid contribution 0.930 1.289 0.725 1.747 sum 9.196 -13.107 -1.213 16.057 Atomic orbital electron populations 1.70088 1.07767 1.27630 1.52051 1.25925 0.95719 1.03213 0.95028 0.85469 0.78772 0.78740 0.78159 1.20422 1.20827 1.18514 1.21483 0.93255 0.91885 1.49761 0.92264 1.18934 0.93455 0.91996 0.95094 1.22611 0.95068 0.95609 0.88083 0.92032 1.21365 0.97848 0.92415 0.99961 1.20680 0.99569 0.94519 1.00903 1.20753 0.99010 0.92100 0.98751 1.21207 0.95915 1.01079 0.97194 1.21388 1.01190 0.90766 1.00315 1.18137 0.94198 0.89977 0.97118 1.84896 1.31906 1.69170 1.45814 1.20499 0.97151 0.89746 0.96895 1.58666 1.23476 1.08013 1.32955 0.92890 0.99105 0.97416 0.91061 0.88386 0.83585 0.82039 0.82957 0.74543 0.82620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 3 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.53 -29.74 8.92 25.60 0.23 -29.51 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.04 2.27 4.65 29.85 0.14 2.40 16 10 C 0.09 3.93 3.39 45.26 0.15 4.08 16 11 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 12 C -0.08 -2.78 6.57 30.67 0.20 -2.58 16 13 C -0.15 -4.99 6.23 -19.50 -0.12 -5.11 16 14 C -0.09 -2.18 10.03 22.23 0.22 -1.96 16 15 C -0.13 -2.84 10.05 22.29 0.22 -2.62 16 16 C -0.12 -2.78 9.96 22.30 0.22 -2.56 16 17 C 0.05 1.62 6.73 22.66 0.15 1.77 16 18 O -0.51 -14.40 13.51 -93.75 -1.27 -15.67 16 19 C 0.06 2.10 6.71 38.29 0.26 2.36 16 20 N -0.61 -25.03 6.68 -312.32 -2.09 -27.12 16 21 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 22 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 23 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 24 H 0.07 2.70 7.91 -2.38 -0.02 2.68 16 25 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 26 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 27 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 28 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.40 7.25 9.06 -74.06 -0.67 6.58 16 30 H 0.35 13.57 8.86 -89.69 -0.79 12.78 16 Total: -1.00 -69.91 261.65 0.80 -69.11 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -0.31 Total: 17.45 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 2.14 Total: -33.34 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -1.80 Total: -84.38 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -1.27 Total: -15.67 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -69.91 0.80 -69.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968930.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.386 kcal (2) G-P(sol) polarization free energy of solvation -69.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds