Wall clock time and date at job start Mon Mar 30 2020 02:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42903 * 109.25588 * 300.80717 * 9 7 2 11 11 C 1.52715 * 109.25636 * 181.36658 * 9 7 2 12 12 C 1.53328 * 108.44788 * 188.42817 * 11 9 7 13 13 C 1.52770 * 108.35747 * 69.83609 * 12 11 9 14 14 C 1.50493 * 110.55952 * 309.14500 * 13 12 11 15 15 C 1.39177 * 117.97421 * 197.23245 * 14 13 12 16 16 C 1.38409 * 118.86862 * 180.56114 * 15 14 13 17 17 C 1.38231 * 118.84151 * 359.97438 * 16 15 14 18 18 N 1.31515 * 120.61400 * 359.90206 * 17 16 15 19 19 C 1.32700 * 122.39677 * 359.97438 * 18 17 16 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 0.96695 * 114.00033 * 59.99755 * 10 9 7 22 22 H 1.09007 * 109.64644 * 308.11542 * 11 9 7 23 23 H 1.09002 * 109.64433 * 68.74356 * 11 9 7 24 24 H 1.09005 * 109.68092 * 310.12218 * 12 11 9 25 25 H 1.08995 * 109.72056 * 189.57593 * 12 11 9 26 26 H 1.08997 * 109.25587 * 188.86683 * 13 12 11 27 27 H 1.08996 * 109.25555 * 69.42389 * 13 12 11 28 28 H 1.08007 * 120.56790 * 0.54461 * 15 14 13 29 29 H 1.07998 * 120.57938 * 179.97438 * 16 15 14 30 30 H 1.08004 * 119.69552 * 179.87744 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4222 -2.5594 1.1678 11 6 2.2477 -3.6558 0.0378 12 6 1.4779 -4.9654 -0.1697 13 6 0.9819 -5.0083 -1.6140 14 6 0.2596 -3.7349 -1.9628 15 6 -0.5631 -3.7375 -3.0854 16 6 -1.2270 -2.5730 -3.4299 17 6 -1.0502 -1.4479 -2.6466 18 7 -0.2665 -1.4831 -1.5910 19 6 0.3854 -2.5797 -1.2258 20 1 -0.4850 0.8400 0.0004 21 1 -0.2323 -1.8496 1.2214 22 1 2.9801 -3.5310 -0.7598 23 1 2.7531 -3.6770 1.0033 24 1 0.6279 -5.0036 0.5118 25 1 2.1369 -5.8131 0.0176 26 1 0.3025 -5.8519 -1.7359 27 1 1.8333 -5.1335 -2.2829 28 1 -0.6812 -4.6329 -3.6777 29 1 -1.8720 -2.5438 -4.2957 30 1 -1.5601 -0.5312 -2.9039 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986531.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:12 Heat of formation + Delta-G solvation = 4.082737 kcal Electronic energy + Delta-G solvation = -15364.950071 eV Core-core repulsion = 12932.803819 eV Total energy + Delta-G solvation = -2432.146252 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.60535 -36.31159 -34.34339 -31.95162 -31.09894 -29.47246 -28.32790 -24.91053 -22.83171 -22.27385 -20.86652 -18.73988 -16.75988 -16.16403 -15.47008 -14.84235 -14.44108 -13.89129 -13.40845 -13.11775 -13.00756 -12.34473 -12.10206 -11.85549 -11.51026 -11.36875 -10.97825 -10.77240 -10.42341 -10.29909 -10.11501 -9.95514 -9.19892 -8.74419 -8.62728 -8.24478 -7.78107 -7.35496 -5.82081 -3.94304 2.15362 2.32859 3.36510 3.39575 3.43569 4.47777 4.93105 5.27956 5.38928 5.54862 5.60280 5.71721 5.76896 5.88846 5.96608 6.05652 6.27440 6.35191 6.44989 6.57581 6.68229 6.75111 6.88449 6.99394 7.15026 7.23223 7.50521 7.79890 8.05685 8.25679 8.90243 9.48480 9.52383 9.68094 11.09890 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.029131 B = 0.014509 C = 0.010999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.939883 B = 1929.364388 C = 2545.189752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.084 3.916 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.564 4.564 8 H 0.057 0.943 9 C 0.296 3.704 10 O -0.586 6.586 11 C -0.095 4.095 12 C -0.120 4.120 13 C -0.067 4.067 14 C -0.152 4.152 15 C -0.102 4.102 16 C -0.203 4.203 17 C 0.068 3.932 18 N -0.359 5.359 19 C 0.140 3.860 20 H 0.257 0.743 21 H 0.382 0.618 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 -5.875 -4.281 7.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.125 4.125 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.601 4.601 8 H 0.075 0.925 9 C 0.256 3.744 10 O -0.395 6.395 11 C -0.133 4.133 12 C -0.158 4.158 13 C -0.105 4.105 14 C -0.154 4.154 15 C -0.128 4.128 16 C -0.223 4.223 17 C -0.093 4.093 18 N -0.066 5.066 19 C 0.004 3.996 20 H 0.068 0.932 21 H 0.233 0.767 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.786 -5.518 -3.626 6.649 hybrid contribution -0.172 0.741 -1.111 1.347 sum -0.958 -4.776 -4.737 6.794 Atomic orbital electron populations 1.69863 1.05505 1.25659 1.43766 1.24850 0.94665 0.98676 0.94307 0.86713 0.79708 0.83302 0.78378 1.20644 1.21382 1.20389 1.21315 0.93037 0.90276 1.55502 0.92467 1.17346 0.85088 0.93158 0.78759 1.86156 1.52934 1.55607 1.44765 1.21469 0.97412 0.93150 1.01249 1.21581 1.00446 0.97979 0.95745 1.20304 0.98605 0.94106 0.97499 1.20670 1.00213 0.96989 0.97556 1.21270 0.97111 0.97744 0.96663 1.21954 1.03109 0.95480 1.01802 1.23076 0.97395 0.96822 0.91986 1.69325 1.01960 1.25741 1.09578 1.23128 0.92922 0.86389 0.97154 0.93173 0.76690 0.91962 0.91697 0.91263 0.92797 0.92101 0.91717 0.86872 0.87008 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.95 8.23 55.43 0.46 -21.50 16 2 C 0.08 2.27 4.79 -17.82 -0.09 2.18 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.56 -15.60 8.17 -34.44 -0.28 -15.88 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.30 7.56 0.75 -93.06 -0.07 7.49 16 10 O -0.59 -15.58 12.40 -35.23 -0.44 -16.02 16 11 C -0.09 -2.05 4.86 -26.71 -0.13 -2.18 16 12 C -0.12 -2.20 5.97 -26.68 -0.16 -2.36 16 13 C -0.07 -1.18 5.68 -28.10 -0.16 -1.34 16 14 C -0.15 -3.19 5.74 -104.60 -0.60 -3.79 16 15 C -0.10 -1.90 9.75 -39.17 -0.38 -2.28 16 16 C -0.20 -3.78 10.12 -39.52 -0.40 -4.18 16 17 C 0.07 1.47 11.19 -17.69 -0.20 1.27 16 18 N -0.36 -9.04 5.65 -9.51 -0.05 -9.09 16 19 C 0.14 3.46 5.77 -82.43 -0.48 2.99 16 20 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 21 H 0.38 10.50 7.05 45.56 0.32 10.82 16 22 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 23 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.07 1.37 7.66 -51.93 -0.40 0.97 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.93 8.13 -51.93 -0.42 0.50 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 29 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.13 2.56 8.06 -52.48 -0.42 2.13 16 LS Contribution 245.49 15.07 3.70 3.70 Total: -1.00 -29.03 245.49 -7.29 -36.32 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.00 Total: 8.39 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -2.94 Total: -18.09 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.40 Total: -30.59 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.44 Total: -16.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.03 -7.29 -36.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986531.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.404 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds