Wall clock time and date at job start Mon Mar 30 2020 02:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48498 * 109.47211 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47075 * 120.00072 * 3 2 1 6 6 H 1.48504 * 109.47404 * 240.00113 * 3 2 1 7 7 C 1.37878 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99686 * 334.47272 * 7 2 1 9 9 C 1.50703 * 120.00094 * 154.47904 * 7 2 1 10 10 O 1.42901 * 109.25406 * 55.11352 * 9 7 2 11 11 C 1.52716 * 109.25664 * 174.59198 * 9 7 2 12 12 C 1.53327 * 108.42878 * 171.55797 * 11 9 7 13 13 C 1.52773 * 108.34762 * 290.10188 * 12 11 9 14 14 C 1.50499 * 110.55820 * 50.80518 * 13 12 11 15 15 C 1.39182 * 117.97524 * 162.71159 * 14 13 12 16 16 C 1.38410 * 118.87211 * 179.78817 * 15 14 13 17 17 C 1.38240 * 118.83824 * 359.97258 * 16 15 14 18 18 N 1.31507 * 120.61660 * 0.12822 * 17 16 15 19 19 C 1.32705 * 122.39727 * 359.95082 * 18 17 16 20 20 H 0.97001 * 120.00131 * 174.93272 * 1 2 3 21 21 H 0.96702 * 114.00263 * 291.40319 * 10 9 7 22 22 H 1.09009 * 109.67391 * 291.28994 * 11 9 7 23 23 H 1.09000 * 109.67676 * 51.81929 * 11 9 7 24 24 H 1.09003 * 109.69088 * 49.81167 * 12 11 9 25 25 H 1.08994 * 109.69517 * 170.38738 * 12 11 9 26 26 H 1.09002 * 109.26137 * 171.07752 * 13 12 11 27 27 H 1.08993 * 109.26010 * 290.52398 * 13 12 11 28 28 H 1.07999 * 120.56638 * 359.80283 * 15 14 13 29 29 H 1.07994 * 120.58023 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.69236 * 180.10921 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 1.5436 -2.0839 0.4021 9 6 3.4013 -1.2575 -0.5629 10 8 4.2184 -0.2865 0.0942 11 6 3.9794 -2.6499 -0.3196 12 6 5.3068 -2.7631 -1.0787 13 6 5.0032 -2.7988 -2.5755 14 6 4.0971 -1.6597 -2.9584 15 6 4.0116 -1.3176 -4.3048 16 6 3.1804 -0.2758 -4.6781 17 6 2.4636 0.3885 -3.7004 18 7 2.5709 0.0389 -2.4372 19 6 3.3574 -0.9526 -2.0383 20 1 -0.4850 -0.8368 -0.0742 21 1 3.9871 0.6287 -0.1154 22 1 4.1532 -2.7939 0.7469 23 1 3.2829 -3.4052 -0.6836 24 1 5.9343 -1.9011 -0.8518 25 1 5.8203 -3.6789 -0.7863 26 1 5.9361 -2.7192 -3.1337 27 1 4.5173 -3.7430 -2.8214 28 1 4.5838 -1.8561 -5.0457 29 1 3.0934 0.0131 -5.7151 30 1 1.8095 1.2024 -3.9765 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:15 Heat of formation + Delta-G solvation = -2.520948 kcal Electronic energy + Delta-G solvation = -15427.615814 eV Core-core repulsion = 12995.183205 eV Total energy + Delta-G solvation = -2432.432609 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.09479 -36.81324 -34.75940 -32.42345 -31.63498 -29.83688 -28.58757 -24.80722 -23.14538 -22.66221 -20.78593 -19.11557 -17.64932 -17.02298 -15.83826 -15.29328 -14.70146 -13.99897 -13.67896 -13.61062 -12.91664 -12.72929 -12.51034 -12.33496 -11.84206 -11.53683 -11.47685 -10.70778 -10.42640 -10.25804 -10.13025 -9.67409 -9.36116 -9.00382 -8.86650 -8.19392 -8.12320 -7.89575 -6.44116 -4.12457 1.77014 1.90434 3.50602 3.58702 3.73467 4.43583 4.64160 4.98473 5.13542 5.23943 5.34231 5.43272 5.52657 5.55913 5.65757 5.74551 5.91995 6.10832 6.20477 6.32835 6.35533 6.41742 6.55698 6.71956 6.86489 6.90803 7.13344 7.39993 7.93791 8.36766 8.63185 8.83264 8.94135 9.59570 10.89132 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.016973 C = 0.012779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.287031 B = 1649.244547 C = 2190.487715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.076 3.924 3 Si 1.060 2.940 4 H -0.301 1.301 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.635 4.635 8 H 0.063 0.937 9 C 0.270 3.730 10 O -0.570 6.570 11 C -0.089 4.089 12 C -0.123 4.123 13 C -0.069 4.069 14 C -0.138 4.138 15 C -0.090 4.090 16 C -0.193 4.193 17 C 0.089 3.911 18 N -0.445 5.445 19 C 0.132 3.868 20 H 0.268 0.732 21 H 0.346 0.654 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.732 -2.348 -7.750 11.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.134 4.134 3 Si 0.894 3.106 4 H -0.229 1.229 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.670 4.670 8 H 0.081 0.919 9 C 0.230 3.770 10 O -0.383 6.383 11 C -0.127 4.127 12 C -0.161 4.161 13 C -0.107 4.107 14 C -0.141 4.141 15 C -0.116 4.116 16 C -0.213 4.213 17 C -0.071 4.071 18 N -0.153 5.153 19 C -0.004 4.004 20 H 0.078 0.922 21 H 0.199 0.801 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.292 -0.819 -6.801 10.756 hybrid contribution 0.159 -1.647 -1.287 2.097 sum 8.452 -2.467 -8.088 11.955 Atomic orbital electron populations 1.70861 1.07655 1.30437 1.41893 1.25694 0.95431 1.02614 0.89706 0.84106 0.75119 0.75854 0.75508 1.22939 1.22410 1.19540 1.22145 0.99112 0.98767 1.46961 0.91896 1.17930 0.91058 0.86086 0.81906 1.86618 1.62057 1.17330 1.72265 1.21405 0.94972 0.95982 1.00329 1.21628 0.98837 1.01615 0.93982 1.20349 0.97283 0.95746 0.97337 1.20535 0.99906 0.99897 0.93720 1.21416 0.98101 0.96738 0.95375 1.21913 1.00317 0.98755 1.00343 1.22692 0.97034 0.98663 0.88711 1.67827 1.15824 1.14146 1.17551 1.22680 0.88689 0.89456 0.99547 0.92229 0.80069 0.91160 0.91589 0.91138 0.92241 0.91559 0.91207 0.86013 0.85874 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.15 13.70 55.43 0.76 -26.39 16 2 C 0.08 2.23 4.54 -17.82 -0.08 2.15 16 3 Si 1.06 27.13 23.03 -169.99 -3.91 23.21 16 4 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 5 H -0.30 -7.31 7.04 56.52 0.40 -6.91 16 6 H -0.27 -6.42 5.34 56.52 0.30 -6.11 16 7 C -0.63 -18.44 8.51 -34.44 -0.29 -18.73 16 8 H 0.06 1.93 7.99 -52.49 -0.42 1.51 16 9 C 0.27 6.78 0.75 -93.06 -0.07 6.71 16 10 O -0.57 -14.53 11.74 -35.23 -0.41 -14.95 16 11 C -0.09 -1.88 4.86 -26.71 -0.13 -2.01 16 12 C -0.12 -2.11 5.97 -26.68 -0.16 -2.27 16 13 C -0.07 -1.12 5.68 -28.10 -0.16 -1.28 16 14 C -0.14 -2.70 5.74 -104.60 -0.60 -3.30 16 15 C -0.09 -1.51 9.75 -39.17 -0.38 -1.89 16 16 C -0.19 -3.21 10.12 -39.52 -0.40 -3.61 16 17 C 0.09 1.77 11.19 -17.69 -0.20 1.57 16 18 N -0.44 -10.74 4.85 -9.51 -0.05 -10.78 16 19 C 0.13 3.11 5.65 -82.43 -0.47 2.65 16 20 H 0.27 8.25 8.73 -40.82 -0.36 7.89 16 21 H 0.35 8.66 3.24 45.56 0.15 8.81 16 22 H 0.07 1.47 8.14 -51.92 -0.42 1.05 16 23 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 24 H 0.07 1.28 7.65 -51.93 -0.40 0.88 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.15 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 237.97 15.07 3.59 3.59 Total: -1.00 -32.45 237.97 -6.27 -38.72 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.30 Total: 6.62 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -2.94 Total: -20.02 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.71 Total: -37.17 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.41 Total: -14.95 kcal Atomic # 14 Polarization: 27.13 SS G_CDS: -3.91 Total: 23.21 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -32.45 -6.27 -38.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.194 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds