Wall clock time and date at job start Mon Mar 30 2020 02:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48498 * 109.47211 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47075 * 120.00072 * 3 2 1 6 6 H 1.48504 * 109.47404 * 240.00113 * 3 2 1 7 7 C 1.37878 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99686 * 334.47272 * 7 2 1 9 9 C 1.50703 * 120.00094 * 154.47904 * 7 2 1 10 10 O 1.42901 * 109.25406 * 55.11352 * 9 7 2 11 11 C 1.52716 * 109.25664 * 174.59198 * 9 7 2 12 12 C 1.53327 * 108.42878 * 171.55797 * 11 9 7 13 13 C 1.52773 * 108.34762 * 290.10188 * 12 11 9 14 14 C 1.50499 * 110.55820 * 50.80518 * 13 12 11 15 15 C 1.39182 * 117.97524 * 162.71159 * 14 13 12 16 16 C 1.38410 * 118.87211 * 179.78817 * 15 14 13 17 17 C 1.38240 * 118.83824 * 359.97258 * 16 15 14 18 18 N 1.31507 * 120.61660 * 0.12822 * 17 16 15 19 19 C 1.32705 * 122.39727 * 359.95082 * 18 17 16 20 20 H 0.97001 * 120.00131 * 174.93272 * 1 2 3 21 21 H 0.96702 * 114.00263 * 291.40319 * 10 9 7 22 22 H 1.09009 * 109.67391 * 291.28994 * 11 9 7 23 23 H 1.09000 * 109.67676 * 51.81929 * 11 9 7 24 24 H 1.09003 * 109.69088 * 49.81167 * 12 11 9 25 25 H 1.08994 * 109.69517 * 170.38738 * 12 11 9 26 26 H 1.09002 * 109.26137 * 171.07752 * 13 12 11 27 27 H 1.08993 * 109.26010 * 290.52398 * 13 12 11 28 28 H 1.07999 * 120.56638 * 359.80283 * 15 14 13 29 29 H 1.07994 * 120.58023 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.69236 * 180.10921 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 1.5436 -2.0839 0.4021 9 6 3.4013 -1.2575 -0.5629 10 8 4.2184 -0.2865 0.0942 11 6 3.9794 -2.6499 -0.3196 12 6 5.3068 -2.7631 -1.0787 13 6 5.0032 -2.7988 -2.5755 14 6 4.0971 -1.6597 -2.9584 15 6 4.0116 -1.3176 -4.3048 16 6 3.1804 -0.2758 -4.6781 17 6 2.4636 0.3885 -3.7004 18 7 2.5709 0.0389 -2.4372 19 6 3.3574 -0.9526 -2.0383 20 1 -0.4850 -0.8368 -0.0742 21 1 3.9871 0.6287 -0.1154 22 1 4.1532 -2.7939 0.7469 23 1 3.2829 -3.4052 -0.6836 24 1 5.9343 -1.9011 -0.8518 25 1 5.8203 -3.6789 -0.7863 26 1 5.9361 -2.7192 -3.1337 27 1 4.5173 -3.7430 -2.8214 28 1 4.5838 -1.8561 -5.0457 29 1 3.0934 0.0131 -5.7151 30 1 1.8095 1.2024 -3.9765 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:15 Heat of formation + Delta-G solvation = -26.284115 kcal Electronic energy + Delta-G solvation = -15428.646262 eV Core-core repulsion = 12995.183205 eV Total energy + Delta-G solvation = -2433.463057 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.63573 -38.54574 -36.32038 -34.59195 -33.25967 -31.30480 -30.26886 -26.70299 -24.68536 -24.15574 -22.45674 -20.70690 -19.82163 -18.80267 -17.36953 -16.79618 -16.25866 -15.71682 -15.35516 -15.15547 -14.74191 -14.40039 -14.06930 -13.99148 -13.43338 -13.25571 -13.06622 -12.45105 -12.06147 -12.00484 -11.78436 -11.58428 -11.13210 -10.90577 -10.50857 -10.23748 -9.67410 -9.61255 -8.74576 -6.44137 0.30309 0.51598 1.41122 1.55605 1.68170 2.52203 2.81620 3.15078 3.50916 3.74769 3.87522 3.96974 4.13923 4.19146 4.21347 4.43063 4.49083 4.72570 4.87539 4.91176 4.94343 5.03433 5.13029 5.26593 5.37854 5.44656 5.50409 5.90505 5.93326 6.01870 6.48797 6.70984 7.35819 7.37025 8.55962 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.016973 C = 0.012779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.287031 B = 1649.244547 C = 2190.487715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.037 3.963 3 Si 1.098 2.902 4 H -0.306 1.306 5 H -0.287 1.287 6 H -0.243 1.243 7 C -0.649 4.649 8 H 0.024 0.976 9 C 0.261 3.739 10 O -0.575 6.575 11 C -0.091 4.091 12 C -0.114 4.114 13 C -0.069 4.069 14 C -0.141 4.141 15 C -0.084 4.084 16 C -0.170 4.170 17 C 0.061 3.939 18 N -0.495 5.495 19 C 0.087 3.913 20 H 0.253 0.747 21 H 0.346 0.654 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.172 0.828 29 H 0.170 0.830 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.533 -2.773 -10.761 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.167 4.167 3 Si 0.927 3.073 4 H -0.235 1.235 5 H -0.215 1.215 6 H -0.169 1.169 7 C -0.685 4.685 8 H 0.042 0.958 9 C 0.222 3.778 10 O -0.387 6.387 11 C -0.129 4.129 12 C -0.152 4.152 13 C -0.106 4.106 14 C -0.143 4.143 15 C -0.110 4.110 16 C -0.189 4.189 17 C -0.099 4.099 18 N -0.204 5.204 19 C -0.048 4.048 20 H 0.061 0.939 21 H 0.199 0.801 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.124 0.876 27 H 0.106 0.894 28 H 0.189 0.811 29 H 0.188 0.812 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 11.113 -1.270 -9.817 14.882 hybrid contribution -0.725 -1.595 -0.423 1.802 sum 10.389 -2.865 -10.240 14.866 Atomic orbital electron populations 1.70969 1.08681 1.29441 1.45398 1.26831 0.95388 1.05691 0.88765 0.83594 0.74538 0.72355 0.76768 1.23483 1.21541 1.16945 1.22379 1.01660 0.97290 1.47138 0.95770 1.18009 0.88652 0.87702 0.83470 1.86569 1.61759 1.17498 1.72921 1.21391 0.97398 0.93626 1.00535 1.21581 0.96005 1.02961 0.94605 1.20484 0.98482 0.95103 0.96515 1.20922 0.99192 0.99718 0.94432 1.21962 0.97713 0.96405 0.94930 1.22389 0.97731 0.97071 1.01730 1.23136 0.98429 0.99960 0.88354 1.67566 1.17086 1.15593 1.20187 1.22285 0.91729 0.92033 0.98734 0.93850 0.80090 0.92271 0.92167 0.92140 0.88647 0.87583 0.89426 0.81075 0.81247 0.82326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.34 13.70 21.45 0.29 -59.04 16 2 C 0.04 2.27 4.54 84.65 0.38 2.65 16 3 Si 1.10 56.47 23.03 68.60 1.58 58.05 16 4 H -0.31 -15.77 7.11 99.48 0.71 -15.07 16 5 H -0.29 -14.11 7.04 99.48 0.70 -13.41 16 6 H -0.24 -11.49 5.34 99.48 0.53 -10.96 16 7 C -0.65 -39.58 8.51 25.60 0.22 -39.37 16 8 H 0.02 1.59 7.99 -2.91 -0.02 1.57 16 9 C 0.26 13.29 0.75 -12.37 -0.01 13.28 16 10 O -0.57 -29.45 11.74 -148.98 -1.75 -31.20 16 11 C -0.09 -3.87 4.86 30.61 0.15 -3.72 16 12 C -0.11 -3.57 5.97 30.63 0.18 -3.39 16 13 C -0.07 -1.87 5.68 29.71 0.17 -1.70 16 14 C -0.14 -4.98 5.74 -19.85 -0.11 -5.10 16 15 C -0.08 -2.35 9.75 22.54 0.22 -2.13 16 16 C -0.17 -4.82 10.12 22.31 0.23 -4.59 16 17 C 0.06 2.28 11.19 84.74 0.95 3.23 16 18 N -0.49 -23.60 4.85 -184.00 -0.89 -24.49 16 19 C 0.09 4.03 5.65 42.28 0.24 4.27 16 20 H 0.25 16.64 8.73 -92.71 -0.81 15.83 16 21 H 0.35 17.30 3.24 -74.06 -0.24 17.06 16 22 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 23 H 0.06 2.54 8.08 -2.39 -0.02 2.53 16 24 H 0.06 2.02 7.65 -2.39 -0.02 2.00 16 25 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.11 2.13 8.13 -2.39 -0.02 2.11 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 28 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 29 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.16 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -75.74 237.97 2.53 -73.21 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.68 Total: 20.03 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 2.61 Total: -36.56 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -0.60 Total: -83.53 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -1.75 Total: -31.20 kcal Atomic # 14 Polarization: 56.47 SS G_CDS: 1.58 Total: 58.05 kcal Total: -75.74 2.53 -73.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.930 kcal (2) G-P(sol) polarization free energy of solvation -75.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds